Next‐generation metrics for monitoring genetic erosion within populations of conservation concern

G Leroy, EL Carroll, MW Bruford… - Evolutionary …, 2018 - Wiley Online Library
Genetic erosion is a major threat to biodiversity because it can reduce fitness and ultimately
contribute to the extinction of populations. Here, we explore the use of quantitative metrics to …

Insights into conifer giga-genomes

AR De La Torre, I Birol, J Bousquet… - Plant …, 2014 - academic.oup.com
Insights from sequenced genomes of major land plant lineages have advanced research in
almost every aspect of plant biology. Until recently, however, assembled genome …

[图书][B] Genetic data analysis for plant and animal breeding

F Isik, J Holland, C Maltecca - 2017 - Springer
We wrote this book to fill the gap between textbooks of quantitative genetic theory and
software manuals that provide details on analytical methods but little context or perspective …

Genomic selection in maritime pine

F Isik, J Bartholomé, A Farjat, E Chancerel, A Raffin… - Plant Science, 2016 - Elsevier
A two-generation maritime pine (Pinus pinaster Ait.) breeding population (n= 661) was
genotyped using 2500 SNP markers. The extent of linkage disequilibrium and utility of …

Performance of genomic prediction within and across generations in maritime pine

J Bartholomé, J Van Heerwaarden, F Isik, C Boury… - BMC genomics, 2016 - Springer
Background Genomic selection (GS) is a promising approach for decreasing breeding cycle
length in forest trees. Assessment of progeny performance and of the prediction accuracy of …

Role of genomics and transcriptomics in selection of reintroduction source populations

X He, ML Johansson, DD Heath - Conservation Biology, 2016 - Wiley Online Library
The use and importance of reintroduction as a conservation tool to return a species to its
historical range from which it has been extirpated will increase as climate change and …

High-density linkage mapping and distribution of segregation distortion regions in the oak genome

C Bodénès, E Chancerel, F Ehrenmann… - DNA …, 2016 - academic.oup.com
We developed the densest single-nucleotide polymorphism (SNP)-based linkage genetic
map to date for the genus Quercus. An 8k gene-based SNP array was used to genotype …

High‐density SNP assay development for genetic analysis in maritime pine (Pinus pinaster)

C Plomion, J Bartholomé, I Lesur… - Molecular Ecology …, 2016 - Wiley Online Library
Maritime pine provides essential ecosystem services in the south‐western M editerranean
basin, where it covers around 4 million ha. Its scattered distribution over a range of …

Effect of hidden relatedness on single-step genetic evaluation in an advanced open-pollinated breeding program

J Klápště, M Suontama, HS Dungey, EJ Telfer… - Journal of …, 2018 - academic.oup.com
Open-pollinated (OP) mating is frequently used in forest tree breeding due to the relative
temporal and financial efficiency of the approach. The trade-off is the lower precision of the …

[HTML][HTML] The long road to bloom in conifers

J Ma, X Chen, F Han, Y Song, B Zhou, Y Nie… - Forestry …, 2022 - pmc.ncbi.nlm.nih.gov
More than 600 species of conifers (phylum Pinophyta) serve as the backbone of the Earth's
terrestrial plant community and play key roles in global carbon and water cycles. Although …