Application of second-generation sequencing (SGS) and third generation sequencing (TGS) in aquaculture breeding program
High-throughput sequencing technologies have expanded gene-based to genome-wide
research in aquaculture species. Several techniques adopting the Second Generation …
research in aquaculture species. Several techniques adopting the Second Generation …
Genome-wide simple sequence repeats (SSR) markers discovered from whole-genome sequence comparisons of multiple spinach accessions
The availability of well-assembled genome sequences and reduced sequencing costs have
enabled the resequencing of many additional accessions in several crops, thus facilitating …
enabled the resequencing of many additional accessions in several crops, thus facilitating …
DNA-based assessment of genetic diversity in grassland plant species: Challenges, approaches, and applications
M Loera-Sánchez, B Studer, R Kölliker - Agronomy, 2019 - mdpi.com
Grasslands are wide-spread, multi-species ecosystems that provide many valuable services.
Plant genetic diversity (ie, the diversity within species) is closely linked to ecosystem …
Plant genetic diversity (ie, the diversity within species) is closely linked to ecosystem …
Handling of targeted amplicon sequencing data focusing on index hopping and demultiplexing using a nested metabarcoding approach in ecology
Y Guenay-Greunke, DA Bohan, M Traugott… - Scientific reports, 2021 - nature.com
High-throughput sequencing platforms are increasingly being used for targeted amplicon
sequencing because they enable cost-effective sequencing of large sample sets. For …
sequencing because they enable cost-effective sequencing of large sample sets. For …
More affordable and effective noninvasive single nucleotide polymorphism genotyping using high‐throughput amplicon sequencing
Noninvasive genotyping methods have become key elements of wildlife research over the
last two decades, but their widespread adoption is limited by high costs, low success rates …
last two decades, but their widespread adoption is limited by high costs, low success rates …
Genomic prediction of complex traits in perennial plants: a case for forest trees
F Isik - Genomic prediction of complex traits: Methods and …, 2022 - Springer
This chapter provides an overview of the genomic selection progress in long-lived forest tree
species. Factors affecting the prediction accuracy in genomic prediction are assessed with …
species. Factors affecting the prediction accuracy in genomic prediction are assessed with …
Genomic selection for heterobothriosis resistance concurrent with body size in the tiger pufferfish, Takifugu rubripes
Parasite resistance traits in aquaculture species often have moderate heritability, indicating
the potential for genetic improvements by selective breeding. However, parasite resistance …
the potential for genetic improvements by selective breeding. However, parasite resistance …
Genomic prediction for testes weight of the tiger pufferfish, Takifugu rubripes, using medium to low density SNPs
Aquaculture production is expected to increase with the help of genomic selection (GS). The
possibility of performing GS using only a small number of SNPs has been examined in order …
possibility of performing GS using only a small number of SNPs has been examined in order …
Genetic Dissection of a Precocious Phenotype in Male Tiger Pufferfish (Takifugu rubripes) using Genotyping by Random Amplicon Sequencing, Direct (GRAS-Di)
S Yoshikawa, M Hamasaki, K Kadomura… - Marine …, 2021 - Springer
The novel non-targeted PCR-based genotyping system, namely Genotyping by Random
Amplicon Sequencing, Direct (GRAS-Di), is characterized by the simplicity in library …
Amplicon Sequencing, Direct (GRAS-Di), is characterized by the simplicity in library …
Effects of low fishmeal diets on growth performance, blood chemical composition, parasite resistance, and gene expression in the tiger pufferfish, Takifugu rubripes
Z Lin, S Yoshikawa, M Hamasaki, T Koyama, K Kikuchi… - Aquaculture, 2022 - Elsevier
The rising price of fishmeal and the need for sustainable use of fishery resources have
encouraged efforts by the aquaculture industry to identify alternative protein sources …
encouraged efforts by the aquaculture industry to identify alternative protein sources …