I-TASSER: a unified platform for automated protein structure and function prediction
The iterative threading assembly refinement (I-TASSER) server is an integrated platform for
automated protein structure and function prediction based on the sequence-to-structure-to …
automated protein structure and function prediction based on the sequence-to-structure-to …
General overview on structure prediction of twilight-zone proteins
Protein structure prediction from amino acid sequence has been one of the most challenging
aspects in computational structural biology despite significant progress in recent years …
aspects in computational structural biology despite significant progress in recent years …
Automated comparative protein structure modeling with SWISS‐MODEL and Swiss‐PdbViewer: A historical perspective
SWISS‐MODEL pioneered the field of automated modeling as the first protein modeling
service on the Internet. In combination with the visualization tool Swiss‐PdbViewer, the …
service on the Internet. In combination with the visualization tool Swiss‐PdbViewer, the …
FINDSITE: a combined evolution/structure-based approach to protein function prediction
J Skolnick, M Brylinski - Briefings in bioinformatics, 2009 - academic.oup.com
A key challenge of the post-genomic era is the identification of the function (s) of all the
molecules in a given organism. Here, we review the status of sequence and structure-based …
molecules in a given organism. Here, we review the status of sequence and structure-based …
Fast and accurate automatic structure prediction with HHpred
A Hildebrand, M Remmert, A Biegert… - Proteins: Structure …, 2009 - Wiley Online Library
Automated protein structure prediction is becoming a mainstream tool for biological
research. This has been fueled by steady improvements of publicly available automated …
research. This has been fueled by steady improvements of publicly available automated …
Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties …
Motivation: In recent years, development of a single-method fold-recognition server lags
behind consensus and multiple template techniques. However, a good consensus …
behind consensus and multiple template techniques. However, a good consensus …
Fast procedure for reconstruction of full‐atom protein models from reduced representations
P Rotkiewicz, J Skolnick - Journal of computational chemistry, 2008 - Wiley Online Library
We introduce PULCHRA, a fast and robust method for the reconstruction of full‐atom protein
models starting from a reduced protein representation. The algorithm is particularly suitable …
models starting from a reduced protein representation. The algorithm is particularly suitable …
Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment
The community-wide GPCR Dock assessment is conducted to evaluate the status of
molecular modeling and ligand docking for human G protein-coupled receptors. The present …
molecular modeling and ligand docking for human G protein-coupled receptors. The present …
Nature of the protein universe
M Levitt - Proceedings of the National Academy of …, 2009 - National Acad Sciences
The protein universe is the set of all proteins of all organisms. Here, all currently known
sequences are analyzed in terms of families that have single-domain or multidomain …
sequences are analyzed in terms of families that have single-domain or multidomain …
pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination
A Lobley, MI Sadowski, DT Jones - Bioinformatics, 2009 - academic.oup.com
Motivation: Generation of structural models and recognition of homologous relationships for
unannotated protein sequences are fundamental problems in bioinformatics. Improving the …
unannotated protein sequences are fundamental problems in bioinformatics. Improving the …