Prevotella diversity, niches and interactions with the human host
The genus Prevotella includes more than 50 characterized species that occur in varied
natural habitats, although most Prevotella spp. are associated with humans. In the human …
natural habitats, although most Prevotella spp. are associated with humans. In the human …
[HTML][HTML] Multi-omics data integration considerations and study design for biological systems and disease
S Graw, K Chappell, CL Washam, A Gies, J Bird… - Molecular omics, 2021 - pubs.rsc.org
With the advancement of next-generation sequencing and mass spectrometry, there is a
growing need for the ability to merge biological features in order to study a system as a …
growing need for the ability to merge biological features in order to study a system as a …
[HTML][HTML] Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
Metagenomic assembly enables new organism discovery from microbial communities, but it
can only capture few abundant organisms from most metagenomes. Here we present …
can only capture few abundant organisms from most metagenomes. Here we present …
[HTML][HTML] Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases
Fecal microbiota transplantation (FMT) is highly effective against recurrent Clostridioides
difficile infection and is considered a promising treatment for other microbiome-related …
difficile infection and is considered a promising treatment for other microbiome-related …
[HTML][HTML] Reconstruction of ancient microbial genomes from the human gut
Loss of gut microbial diversity–in industrial populations is associated with chronic diseases,
underscoring the importance of studying our ancestral gut microbiome. However, relatively …
underscoring the importance of studying our ancestral gut microbiome. However, relatively …
[HTML][HTML] The person-to-person transmission landscape of the gut and oral microbiomes
The human microbiome is an integral component of the human body and a co-determinant
of several health conditions,. However, the extent to which interpersonal relations shape the …
of several health conditions,. However, the extent to which interpersonal relations shape the …
[HTML][HTML] Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome
MG Durrant, A Fanton, J Tycko, M Hinks… - Nature …, 2023 - nature.com
Large serine recombinases (LSRs) are DNA integrases that facilitate the site-specific
integration of mobile genetic elements into bacterial genomes. Only a few LSRs, such as …
integration of mobile genetic elements into bacterial genomes. Only a few LSRs, such as …
[HTML][HTML] Expanded catalog of microbial genes and metagenome-assembled genomes from the pig gut microbiome
C Chen, Y Zhou, H Fu, X Xiong, S Fang, H Jiang… - Nature …, 2021 - nature.com
Gut microbiota plays an important role in pig health and production. Still, availability of
sequenced genomes and functional information for most pig gut microbes remains limited …
sequenced genomes and functional information for most pig gut microbes remains limited …
[HTML][HTML] Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome
Lactic acid bacteria (LAB) are fundamental in the production of fermented foods and several
strains are regarded as probiotics. Large quantities of live LAB are consumed within …
strains are regarded as probiotics. Large quantities of live LAB are consumed within …
Diversity and functional landscapes in the microbiota of animals in the wild
D Levin, N Raab, Y Pinto, D Rothschild, G Zanir… - Science, 2021 - science.org
Animals in the wild are able to subsist on pathogen-infected and poisonous food and show
immunity to various diseases. These may be due to their microbiota, yet we have a poor …
immunity to various diseases. These may be due to their microbiota, yet we have a poor …