[HTML][HTML] Single-molecule insights into repetitive helicases

YM Zhang, B Li, WQ Wu - Journal of Biological Chemistry, 2024 - Elsevier
Helicases are ubiquitous motors involved in almost all aspects of nucleic acid metabolism;
therefore, revealing their unwinding behaviors and mechanisms is fundamentally and …

Single-molecule insights into the dynamics of replicative helicases

RR Spinks, LM Spenkelink, NE Dixon… - Frontiers in Molecular …, 2021 - frontiersin.org
Helicases are molecular motors that translocate along single-stranded DNA and unwind
duplex DNA. They rely on the consumption of chemical energy from nucleotide hydrolysis to …

Four Parallel Pathways in T4 Ligase‐Catalyzed Repair of Nicked DNA with Diverse Bending Angles

N Li, J Ma, H Fu, Z Yang, C Xu, H Li, Y Zhao… - Advanced …, 2024 - Wiley Online Library
The structural diversity of biological macromolecules in different environments contributes
complexity to enzymological processes vital for cellular functions. Fluorescence resonance …

Single-molecule Surface-Induced Fluorescence Attenuation Based on Reduced Graphene Oxide

Q Fan, C Yang, S Hu, C Xu, M Li, Y Lu - arXiv preprint arXiv:2412.19592, 2024 - arxiv.org
Single-molecule surface-induced fluorescence attenuation (smSIFA) is a precise method for
studying the vertical movement of biological macromolecules using two-dimensional …

Identification of flexible Pif1–DNA interactions and their impacts on enzymatic activities

J Li, J Ma, V Kumar, H Fu, C Xu, S Wang… - Nucleic Acids …, 2022 - academic.oup.com
Flexible regions in biomolecular complexes, although crucial to understanding structure–
function relationships, are often unclear in high-resolution crystal structures. In this study, we …

Single-molecular methodologies for the physical biology of protein machines

S Wang, Y Lu, M Li - Chinese Physics B, 2022 - iopscience.iop.org
Physical biology is an interdisciplinary field that bridges biology with physical sciences and
engineering. Single-molecule physical biology focuses on dynamics of individual …

Translation of the long-term fundamental studies on viral DNA packaging motors into nanotechnology and nanomedicine

C Liang, T Weitao, L Zhou, P Guo - Science China Life Sciences, 2020 - Springer
Many years of fundamental studies on viral genome packaging motors have led to fruitful
applications. The double-stranded DNA (dsDNA) viruses package their genomes into …

RQC helical hairpin in Bloom's syndrome helicase regulates DNA unwinding by dynamically intercepting nascent nucleotides

J Ma, C Xu, J Li, XM Hou, LT Da, Q Jia, X Huang, J Yu… - Iscience, 2022 - cell.com
The RecQ family of helicases are important for maintenance of genomic integrity. Although
functions of constructive subdomains of this family of helicases have been extensively …

[PDF][PDF] DNA 双链退火压力对DNA 聚合酶gp5 链置换的调控

贾棋, 樊秦凯, 侯文清, 杨晨光, 王利邦, 王浩, 徐春华… - 2021 - wulixb.iphy.ac.cn
DNA 聚合酶是执行DNA 复制和修复的重要蛋白, 由于其只能从5′ 向3′ 方向聚合,
所以在聚合双链DNA 时会有两种模式: 其一是先打开DNA 双链, 让其暴露出3′-5 …

Unraveling Reversible DNA Cross-Links with a Biological Machine

SR Byrne, SE Rokita - Chemical research in toxicology, 2020 - ACS Publications
The reversible generation and capture of certain electrophilic quinone methide
intermediates support dynamic reactions with DNA that allow for migration and transfer of …