[HTML][HTML] Large-scale analysis reveals that the genome features of simple sequence repeats are generally conserved at the family level in insects

S Ding, S Wang, K He, M Jiang, F Li - BMC genomics, 2017 - Springer
Background Simple sequence repeats (SSR), also called microsatellites, have been widely
used as genetic markers, and have been extensively studied in some model insects. At …

[HTML][HTML] Comparative analysis, distribution, and characterization of microsatellites in Orf virus genome

BP Sahu, P Majee, RR Singh, A Sahoo, D Nayak - Scientific reports, 2020 - nature.com
Genome-wide in-silico identification of microsatellites or simple sequence repeats (SSRs) in
the Orf virus (ORFV), the causative agent of contagious ecthyma has been carried out to …

[HTML][HTML] Genome-wide survey and analysis of microsatellite sequences in bovid species

WH Qi, XM Jiang, LM Du, GS Xiao, TZ Hu, BS Yue… - PLoS …, 2015 - journals.plos.org
Microsatellites or simple sequence repeats (SSRs) have become the most popular source of
genetic markers, which are ubiquitously distributed in many eukaryotic and prokaryotic …

Molecular genetic analysis and evolution of begomoviruses and betasatellites causing yellow mosaic disease of bhendi

RV Kumar, HC Prasanna, AK Singh, D Ragunathan… - Virus Genes, 2017 - Springer
Abstract In India, Bhendi yellow vein mosaic disease (BYVMD) is one of the most
economically important diseases of bhendi/okra and is caused by a complex of monopartite …

Insights into genome plasticity and gene regulation in Orientia tsutsugamushi through genome-wide mining of microsatellite markers

S Panda, SK Swain, BP Sahu, R Sarangi - 3 Biotech, 2023 - Springer
Microsatellite markers are being used for molecular identification and characterization as
well as estimation of evolution patterns due to their highly polymorphic nature. The repeats …

[HTML][HTML] Microsatellite Diversity, Complexity, and Host Range of Mycobacteriophage Genomes of the Siphoviridae Family

CM Alam, A Iqbal, A Sharma, AH Schulman… - Frontiers in genetics, 2019 - frontiersin.org
The incidence, distribution, and variation of simple sequence repeats (SSRs) in viruses is
instrumental in understanding the functional and evolutionary aspects of repeat sequences …

[HTML][HTML] Genome-wide characterization and analysis of microsatellite sequences in camelid species

MM Manee, AT Algarni, SN Alharbi, BM Al-Shomrani… - Mammal Research, 2020 - Springer
Microsatellites or simple sequence repeats (SSRs) are among the genetic markers most
widely utilized in research. This includes applications in numerous fields such as genetic …

PSMD: An extensive database for pan‐species microsatellite investigation and marker development

L Du, Q Liu, K Zhao, J Tang, X Zhang… - Molecular ecology …, 2020 - Wiley Online Library
Microsatellites are widely distributed throughout nearly all genomes which have been
extensively exploited as powerful genetic markers for diverse applications due to their high …

[HTML][HTML] Microsatellite signature of reference genome sequence of SARS-CoV-2 and 32 species of Coronaviridae family

R Laskar, MG Jilani, T Nasrin, S Ali - International Journal of Infection, 2022 - brieflands.com
Background: Simple sequence repeats (SSRs) are 1-6 bp repeat motif sequences present
across both prokaryotic and eukaryotic genomes with various clinical implications besides …

Frequency and distribution of simple and compound microsatellites in forty-eight Human papillomavirus (HPV) genomes

AK Singh, CM Alam, C Sharfuddin, S Ali - Infection, Genetics and Evolution, 2014 - Elsevier
Simple sequence repeats (SSRs) are tandem-repeated sequences ubiquitously present but
differentially distributed across genomes. Present study is a systematic analysis for …