Bacterial sigma factors: a historical, structural, and genomic perspective

A Feklístov, BD Sharon, SA Darst… - Annual review of …, 2014 - annualreviews.org
Transcription initiation is the crucial focal point of gene expression in prokaryotes. The key
players in this process, sigma factors (σs), associate with the catalytic core RNA polymerase …

The restaurant at the end of the random walk: recent developments in the description of anomalous transport by fractional dynamics

R Metzler, J Klafter - Journal of Physics A: Mathematical and …, 2004 - iopscience.iop.org
Fractional dynamics has experienced a firm upswing during the past few years, having been
forged into a mature framework in the theory of stochastic processes. A large number of …

[HTML][HTML] Evaluation and improvement of isothermal amplification methods for point-of-need plant disease diagnostics

Y Zou, MG Mason, JR Botella - PloS one, 2020 - journals.plos.org
A number of isothermal DNA amplification technologies claim to be ideal for point-of-need
(PON) applications as they enable reactions to be performed using a single-temperature …

Label-free single-molecule detection of DNA-hybridization kinetics with a carbon nanotube field-effect transistor

S Sorgenfrei, C Chiu, RL Gonzalez Jr, YJ Yu… - Nature …, 2011 - nature.com
Single-molecule measurements of biomolecules can provide information about the
molecular interactions and kinetics that are hidden in ensemble measurements. However …

Nonlinear dynamics and statistical physics of DNA

M Peyrard - Nonlinearity, 2004 - iopscience.iop.org
DNA is not only an essential object of study for biologists—it also raises very interesting
questions for physicists. This paper discuss its nonlinear dynamics, its statistical mechanics …

Single-molecule experiments in biological physics: methods and applications

F Ritort - Journal of Physics: Condensed Matter, 2006 - iopscience.iop.org
I review single-molecule experiments (SMEs) in biological physics. Recent technological
developments have provided the tools to design and build scientific instruments of high …

Real-time detection of isothermal amplification reactions with thermostable catalytic hairpin assembly

Y Jiang, B Li, JN Milligan, S Bhadra… - Journal of the American …, 2013 - ACS Publications
Catalytic hairpin assembly (CHA) is an enzyme-free amplification method that has
previously proven useful in amplifying and transducing signals at the terminus of nucleic …

Force‐Triggered Self‐Destructive Hydrogels

T Rajasooriya, H Ogasawara, Y Dong… - Advanced …, 2023 - Wiley Online Library
Self‐destructive polymers (SDPs) are defined as a class of smart polymers that
autonomously degrade upon experiencing an external trigger, such as a chemical cue or …

Fifty years of DNA “breathing”: Reflections on old and new approaches

PH von Hippel, NP Johnson, AH Marcus - Biopolymers, 2013 - Wiley Online Library
The coding sequences for genes, and much other regulatory information involved in
genome expression, are located 'inside'the DNA duplex. Thus the “macromolecular …

A coarse grained model for atomic-detailed DNA simulations with explicit electrostatics

PD Dans, A Zeida, MR Machado… - Journal of chemical …, 2010 - ACS Publications
Coarse-grain (CG) techniques allow considerable extension of the accessible size and time
scales in simulations of biological systems. Although many CG representations are available …