[HTML][HTML] Dynamic control in metabolic engineering: Theories, tools, and applications
Metabolic engineering has allowed the production of a diverse number of valuable
chemicals using microbial organisms. Many biological challenges for improving bio …
chemicals using microbial organisms. Many biological challenges for improving bio …
[HTML][HTML] Applications and tuning strategies for transcription factor-based metabolite biosensors
Transcription factor (TF)-based biosensors are widely used for the detection of metabolites
and the regulation of cellular pathways in response to metabolites. Several challenges …
and the regulation of cellular pathways in response to metabolites. Several challenges …
[HTML][HTML] Local flux coordination and global gene expression regulation in metabolic modeling
Genome-scale metabolic networks (GSMs) are fundamental systems biology
representations of a cell's entire set of stoichiometrically balanced reactions. However, such …
representations of a cell's entire set of stoichiometrically balanced reactions. However, such …
[HTML][HTML] Coupling metabolic addiction with negative autoregulation to improve strain stability and pathway yield
Metabolic addiction, an organism that is metabolically addicted with a compound to maintain
its growth fitness, is an underexplored area in metabolic engineering. Microbes with heavily …
its growth fitness, is an underexplored area in metabolic engineering. Microbes with heavily …
The growth dependent design constraints of transcription-factor-based metabolite biosensors
CJ Hartline, F Zhang - ACS synthetic biology, 2022 - ACS Publications
Metabolite biosensors based on metabolite-responsive transcription factors are key
synthetic biology components for sensing and precisely controlling cellular metabolism …
synthetic biology components for sensing and precisely controlling cellular metabolism …
Bayesian optimization for design of multiscale biological circuits
C Merzbacher, O Mac Aodha… - ACS Synthetic Biology, 2023 - ACS Publications
Recent advances in synthetic biology have enabled the construction of molecular circuits
that operate across multiple scales of cellular organization, such as gene regulation …
that operate across multiple scales of cellular organization, such as gene regulation …
The Escherichia coli FadR transcription factor: Too much of a good thing?
JE Cronan - Molecular microbiology, 2021 - Wiley Online Library
Escherichia coli FadR is a transcription factor regulated by acyl‐CoA thioester binding that
optimizes fatty acid (FA) metabolism in response to environmental FAs. FadR represses the …
optimizes fatty acid (FA) metabolism in response to environmental FAs. FadR represses the …
[HTML][HTML] Designing an irreversible metabolic switch for scalable induction of microbial chemical production
Bacteria can be harnessed to synthesise high-value chemicals. A promising strategy for
increasing productivity uses inducible control systems to switch metabolism from growth to …
increasing productivity uses inducible control systems to switch metabolism from growth to …
[HTML][HTML] Control strategies to manage trade-offs during microbial production
Highlights•Feedback control can mitigate the impact of the ribosomal cost.•Feedback control
alleviates metabolic burden caused by engineered metabolic pathways.•Metabolic switch …
alleviates metabolic burden caused by engineered metabolic pathways.•Metabolic switch …
[HTML][HTML] Opportunities at the interface of network science and metabolic modeling
Metabolism plays a central role in cell physiology because it provides the molecular
machinery for growth. At the genome-scale, metabolism is made up of thousands of …
machinery for growth. At the genome-scale, metabolism is made up of thousands of …