Multi-objective optimization methods in drug design

CA Nicolaou, N Brown - Drug Discovery Today: Technologies, 2013 - Elsevier
Drug discovery is a challenging multi-objective problem where numerous pharmaceutically
important objectives need to be adequately satisfied for a solution to be found. The problem …

Multiobjective optimization in bioinformatics and computational biology

J Handl, DB Kell, J Knowles - IEEE/ACM Transactions on …, 2007 - ieeexplore.ieee.org
This paper reviews the application of multiobjective optimization in the fields of
bioinformatics and computational biology. A survey of existing work, organized by …

Riccardo Poli, William B. Langdon, Nicholas F. McPhee: A Field Guide to Genetic Programming: Lulu. com, 2008, 250 pp, ISBN 978-1-4092-0073-4

M O'Neill - 2009 - Springer
The latest book on Genetic Programming, Poli, Langdon and McPhee's (with contributions
from John R. Koza) A Field Guide to Genetic Programming represents an exciting landmark …

Generating conformer ensembles using a multiobjective genetic algorithm

MJ Vainio, MS Johnson - Journal of chemical information and …, 2007 - ACS Publications
The task of generating a nonredundant set of low-energy conformations for small molecules
is of fundamental importance for many molecular modeling and drug-design methodologies …

De Novo Drug Design of Targeted Chemical Libraries Based on Artificial Intelligence and Pair-Based Multiobjective Optimization

A Domenico, G Nicola, T Daniela, C Fulvio… - Journal of Chemical …, 2020 - ACS Publications
Artificial intelligence and multiobjective optimization represent promising solutions to bridge
chemical and biological landscapes by addressing the automated de novo design of …

On exploring structure–activity relationships

R Guha - In silico models for drug discovery, 2013 - Springer
Understanding structure–activity relationships (SARs) for a given set of molecules allows
one to rationally explore chemical space and develop a chemical series optimizing multiple …

Feature selection methods in QSAR studies

M Goodarzi, B Dejaegher… - Journal of AOAC …, 2012 - academic.oup.com
A quantitative structure-activity relationship (QSAR) relates quantitative chemical structure
attributes (molecular descriptors) to a biological activity. QSAR studies have now become …

Lipophilicity and biomimetic properties to support drug discovery

F Tsopelas, C Giaginis… - Expert opinion on drug …, 2017 - Taylor & Francis
Introduction: Lipophilicity, expressed as the octanol-water partition coefficient, constitutes the
most important property in drug action, influencing both pharmacokinetic and …

TIRESIA: an explainable artificial intelligence platform for predicting developmental toxicity

MV Togo, F Mastrolorito, F Ciriaco… - Journal of Chemical …, 2022 - ACS Publications
Herein, a robust and reproducible eXplainable Artificial Intelligence (XAI) approach is
presented, which allows prediction of developmental toxicity, a challenging human-health …

Ligand efficiency metrics in drug discovery: The pros and cons from a practical perspective

MM Cavalluzzi, GF Mangiatordi… - Expert opinion on drug …, 2017 - Taylor & Francis
Introduction: Ligand efficiency metrics are almost universally accepted as a valuable
indicator of compound quality and an aid to reduce attrition. Areas covered: In this review …