Intracellular mRNA transport and localized translation

S Das, M Vera, V Gandin, RH Singer… - Nature reviews Molecular …, 2021 - nature.com
Fine-tuning cellular physiology in response to intracellular and environmental cues requires
precise temporal and spatial control of gene expression. High-resolution imaging …

[HTML][HTML] Light-up RNA aptamers and their cognate fluorogens: from their development to their applications

F Bouhedda, A Autour, M Ryckelynck - International journal of molecular …, 2017 - mdpi.com
An RNA-based fluorogenic module consists of a light-up RNA aptamer able to specifically
interact with a fluorogen to form a fluorescent complex. Over the past decade, significant …

[HTML][HTML] Fluorescence in situ hybridization (FISH) and cell sorting of living bacteria

G Batani, K Bayer, J Böge, U Hentschel, T Thomas - Scientific reports, 2019 - nature.com
Despite the development of several cultivation methods, the rate of discovery of
microorganisms that are yet-to-be cultivated outpaces the rate of isolating and cultivating …

Broadening the definition of bacterial small RNAs: characteristics and mechanisms of action

MC Carrier, D Lalaouna, E Massé - Annual review of …, 2018 - annualreviews.org
The first report of trans-acting RNA-based regulation in bacterial cells dates back to 1984.
Subsequent studies in diverse bacteria unraveled shared properties of trans-acting small …

[HTML][HTML] A how-to guide for mode of action analysis of antimicrobial peptides

AB Schäfer, M Wenzel - Frontiers in cellular and infection microbiology, 2020 - frontiersin.org
Antimicrobial peptides (AMPs) are a promising alternative to classical antibiotics in the fight
against multi-resistant bacteria. They are produced by organisms from all domains of life and …

MinD-RNase E interplay controls localization of polar mRNAs in E. coli

S Kannaiah, O Goldberger, N Alam, G Barnabas… - The EMBO …, 2024 - embopress.org
The E. coli transcriptome at the cell's poles (polar transcriptome) is unique compared to the
membrane and cytosol. Several factors have been suggested to mediate mRNA localization …

RNA localization in prokaryotes: where, when, how, and why

M Irastortza‐Olaziregi… - Wiley Interdisciplinary …, 2021 - Wiley Online Library
Only recently has it been recognized that the transcriptome of bacteria and archaea can be
spatiotemporally regulated. All types of prokaryotic transcripts—rRNAs, tRNAs, mRNAs, and …

RNA localization in bacteria

J Fei, CM Sharma - Microbiology spectrum, 2018 - Am Soc Microbiol
Diverse mechanisms and functions of posttranscriptional regulation by small regulatory
RNAs and RNA-binding proteins have been described in bacteria. In contrast, little is known …

Recent advances in tools to map the microbiome

H Shi, B Grodner, I De Vlaminck - Current opinion in biomedical …, 2021 - Elsevier
Microbes thrive in diverse habitats. They often form ecological niches with rich species
diversity and complex spatial structure. These communities drive biogeochemical cycles in …

[HTML][HTML] ColiCoords: A Python package for the analysis of bacterial fluorescence microscopy data

JH Smit, Y Li, EM Warszawik, A Herrmann, T Cordes - PloS one, 2019 - journals.plos.org
Single-molecule fluorescence microscopy studies of bacteria provide unique insights into
the mechanisms of cellular processes and protein machineries in ways that are unrivalled by …