Endoplasmic reticulum stress in metabolic liver diseases and hepatic fibrosis

JL Maiers, H Malhi - Seminars in liver disease, 2019 - thieme-connect.com
Endoplasmic reticulum (ER) stress is a major contributor to liver disease and hepatic
fibrosis, but the role it plays varies depending on the cause and progression of the disease …

Next-generation analysis of gene expression regulation–comparing the roles of synthesis and degradation

J McManus, Z Cheng, C Vogel - Molecular BioSystems, 2015 - pubs.rsc.org
Technological advances now enable routine measurement of mRNA and protein
abundances, and estimates of their rates of synthesis and degradation that inform on their …

Differential dynamics of the mammalian mRNA and protein expression response to misfolding stress

Z Cheng, G Teo, S Krueger, TM Rock… - Molecular systems …, 2016 - embopress.org
The relative importance of regulation at the mRNA versus protein level is subject to ongoing
debate. To address this question in a dynamic system, we mapped proteomic and …

Analysis of genome-wide changes in the translatome of Arabidopsis seedlings subjected to heat stress

E Yangueez, AB Castro-Sanz, N Fernandez-Bautista… - PloS one, 2013 - journals.plos.org
Heat stress is one of the most prominent and deleterious environmental threats affecting
plant growth and development. Upon high temperatures, plants launch specialized gene …

Systemic reprogramming of translation efficiencies on oxygen stimulus

JJD Ho, M Wang, TE Audas, D Kwon, SK Carlsson… - Cell reports, 2016 - cell.com
Protein concentrations evolve under greater evolutionary constraint than mRNA levels.
Translation efficiency of mRNA represents the chief determinant of basal protein …

Translational remodeling by RNA‐binding proteins and noncoding RNAs

JJD Ho, JHS Man, JH Schatz… - Wiley Interdisciplinary …, 2021 - Wiley Online Library
Responsible for generating the proteome that controls phenotype, translation is the ultimate
convergence point for myriad upstream signals that influence gene expression. System …

New insights into the cellular temporal response to proteostatic stress

J Rendleman, Z Cheng, S Maity, N Kastelic… - Elife, 2018 - elifesciences.org
Maintaining a healthy proteome involves all layers of gene expression regulation. By
quantifying temporal changes of the transcriptome, translatome, proteome, and RNA-protein …

Regulation of the transcriptome by ER stress: non-canonical mechanisms and physiological consequences

AM Arensdorf, D Diedrichs, DT Rutkowski - Frontiers in genetics, 2013 - frontiersin.org
The mammalian unfolded protein response (UPR) is propagated by three ER-resident
transmembrane proteins, each of which initiates a signaling cascade that ultimately …

Endoplasmic reticulum stress in the diabetic kidney, the good, the bad and the ugly

R Cunard - Journal of clinical medicine, 2015 - mdpi.com
Diabetic kidney disease is the leading worldwide cause of end stage kidney disease and a
growing public health challenge. The diabetic kidney is exposed to many environmental …

The mTOR signaling pathway activity and vitamin D availability control the expression of most autism predisposition genes

EA Trifonova, AI Klimenko, ZS Mustafin… - International Journal of …, 2019 - mdpi.com
Autism spectrum disorder (ASD) has a strong and complex genetic component with an
estimate of more than 1000 genes implicated cataloged in SFARI (Simon′ s Foundation …