Transcriptional regulation in archaea: from individual genes to global regulatory networks
M Martinez-Pastor, PD Tonner… - Annual review of …, 2017 - annualreviews.org
Archaea are major contributors to biogeochemical cycles, possess unique metabolic
capabilities, and resist extreme stress. To regulate the expression of genes encoding these …
capabilities, and resist extreme stress. To regulate the expression of genes encoding these …
Regulatory network features in Listeria monocytogenes—changing the way we talk
Our understanding of how pathogens shape their gene expression profiles in response to
environmental changes is ever growing. Advances in Bioinformatics have made it possible …
environmental changes is ever growing. Advances in Bioinformatics have made it possible …
Systematic discovery of archaeal transcription factor functions in regulatory networks through quantitative phenotyping analysis
CL Darnell, PD Tonner, JG Gulli, SC Schmidler… - …, 2017 - Am Soc Microbiol
Gene regulatory networks (GRNs) are critical for dynamic transcriptional responses to
environmental stress. However, the mechanisms by which GRN regulation adjusts …
environmental stress. However, the mechanisms by which GRN regulation adjusts …
Genomics-based insights into the evolution of secondary metabolite biosynthesis in actinomycete bacteria
SB Zotchev - … biology: genome evolution, speciation, coevolution and …, 2014 - Springer
Actinomycete bacteria are known for their ability to produce chemically diverse secondary
metabolites with various biological activities, some of which are being used in human …
metabolites with various biological activities, some of which are being used in human …
Proteins needed to activate a transcriptional response to the reactive oxygen species singlet oxygen
TW Nam, EC Ziegelhoffer, RAS Lemke, TJ Donohue - MBio, 2013 - Am Soc Microbiol
ABSTRACT Singlet oxygen (1O2) is a reactive oxygen species generated by energy transfer
from one or more excited donors to molecular oxygen. Many biomolecules are prone to …
from one or more excited donors to molecular oxygen. Many biomolecules are prone to …
Shedding light on a Group IV (ECF11) alternative σ factor
TJ Donohue - Molecular Microbiology, 2019 - Wiley Online Library
This year marks the 50th anniversary of the discovery of σ70 as a protein factor that was
needed for bacterial RNA polymerase to accurately transcribe a promoter in vitro. It was 25 …
needed for bacterial RNA polymerase to accurately transcribe a promoter in vitro. It was 25 …
Bayesian modeling of microbial physiology
PD Tonner - 2017 - search.proquest.com
Microbial population growth measurements are widespread in the study of microorganisms,
providing insight into areas including genetics, physiology, and engineering. The most …
providing insight into areas including genetics, physiology, and engineering. The most …