Large‐scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis

N Sugiyama, H Nakagami, K Mochida… - Molecular systems …, 2008 - embopress.org
Protein phosphorylation regulates a wide range of cellular processes. Here, we report the
proteome‐wide mapping of in vivo phosphorylation sites in Arabidopsis by using …

A Review of the “Omics” Approach to Biomarkers of Oxidative Stress in Oryza sativa

NL Ma, Z Rahmat, SS Lam - International Journal of Molecular Sciences, 2013 - mdpi.com
Physiological and ecological constraints that cause the slow growth and depleted
production of crops have raised a major concern in the agriculture industry as they represent …

Clarifying Omics Concepts, Challenges, and Opportunities for Prunus Breeding in the Postgenomic Era

P Martinez-Gomez, R Sánchez-Pérez… - OMICS: A Journal of …, 2012 - liebertpub.com
The recent sequencing of the complete genome of the peach, together with the availability of
new high-throughput genome, transcriptome, proteome, and metabolome analysis …

Genome Projector: zoomable genome map with multiple views

K Arakawa, S Tamaki, N Kono, N Kido, K Ikegami… - BMC …, 2009 - Springer
Background Molecular biology data exist on diverse scales, from the level of molecules to-
omics. At the same time, the data at each scale can be categorised into multiple layers, such …

[HTML][HTML] Ontological discovery environment: a system for integrating gene–phenotype associations

EJ Baker, JJ Jay, VM Philip, Y Zhang, Z Li, R Kirova… - Genomics, 2009 - Elsevier
The wealth of genomic technologies has enabled biologists to rapidly ascribe phenotypic
characters to biological substrates. Central to effective biological investigation is the …

PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning

Y Yoshida, Y Makita, N Heida, S Asano… - Nucleic acids …, 2009 - academic.oup.com
Abstract PosMed (http://omicspace. riken. jp/) prioritizes candidate genes for positional
cloning by employing our original database search engine GRASE, which uses an …

Multi-Omics Data-Driven Systems Biology of E. coli

N Ishii, M Tomita - Systems biology and biotechnology of Escherichia coli, 2009 - Springer
The omics, which means comprehensive analysis of a specific layer in a cellular system, are
emerging as essential methodological approaches for molecular biology and systems …

Statistical search on the Semantic Web

N Kobayashi, T Toyoda - Bioinformatics, 2008 - academic.oup.com
Motivation: Statistical analysis of links on the Semantic Web is important for various
evaluation purposes such as quantifying an individual's scientific research output based on …

Growing trend of CE at the omics level: the frontier of systems biology

E Oh, MN Hasan, M Jamshed, SH Park… - …, 2010 - Wiley Online Library
In a novel attempt to comprehend the complexity of life, systems biology has recently
emerged as a state‐of‐the‐art approach for biological research in contrast to the reductionist …

[HTML][HTML] A monogenic dominant mutation in Rom1 generated by N-ethyl-N-nitrosourea mutagenesis causes retinal degeneration in mice

H Sato, T Suzuki, K Ikeda, H Masuya, H Sezutsu… - Molecular …, 2010 - ncbi.nlm.nih.gov
Purpose To characterize an N-ethyl-N-nitrosourea-induced dominant mouse mutant, M-
1156, that exhibits progressive retinal degeneration and to investigate the pathogenesis of …