Molecular docking methodology explores the behavior of small molecules in the binding site
of a target protein. As more protein structures are determined experimentally using X-ray …

Highlights•Reviewed scoring schemes and conformational sampling for protein–protein
complex structure prediction.•Discussed the database for binding affinity of complexes and …

Antimicrobial resistance is the key threat to global health due to high morbidity and mortality.
The alteration of bacterial proteins, enzymatic degradation, and change of membrane …

Abstract Background Protein-protein interactions (PPIs) play several roles in living cells, and
computational PPI prediction is a major focus of many researchers. The three-dimensional …

Protein–protein interactions (PPIs) play important roles in biological processes of life, and
predicting PPIs becomes a critical scientific issue of concern. Most PPIs occur through small …

The impact of H. pylori resistance on patient's treatment failure is a major concern.
Therefore, the development of novel or alternative therapies for H. pylori is urgently needed …

Background Elucidation of protein-protein interaction (PPI) networks is important for
understanding disease mechanisms and for drug discovery. Tertiary-structure-based in …

Unveiling the preferred chemoattractants of plant growth-promoting rhizobacteria (PGPR)
toward the rhizosphere is crucial for engineering PGPR to improve their chemotactic …

Even in the age of big data in Biology, studying the connections between the biological
processes and the molecular mechanisms behind them is a challenging task. Systems …

Prediction of biological interaction networks from single-omics data has been extensively
implemented to understand various aspects of biological systems. However, more recently …