Trithorax group proteins: switching genes on and keeping them active

B Schuettengruber, AM Martinez, N Iovino… - … reviews Molecular cell …, 2011 - nature.com
Cellular memory is provided by two counteracting groups of chromatin proteins termed
Trithorax group (TrxG) and Polycomb group (PcG) proteins. TrxG proteins activate …

[HTML][HTML] Mammalian NET-seq reveals genome-wide nascent transcription coupled to RNA processing

T Nojima, T Gomes, ARF Grosso, H Kimura, MJ Dye… - Cell, 2015 - cell.com
Transcription is a highly dynamic process. Consequently, we have developed native
elongating transcript sequencing technology for mammalian chromatin (mNET-seq), which …

[HTML][HTML] H3K4me3 breadth is linked to cell identity and transcriptional consistency

BA Benayoun, EA Pollina, D Ucar, S Mahmoudi… - Cell, 2014 - cell.com
Trimethylation of histone H3 at lysine 4 (H3K4me3) is a chromatin modification known to
mark the transcription start sites of active genes. Here, we show that H3K4me3 domains that …

[HTML][HTML] On the way of revealing coactivator complexes cross-talk during transcriptional activation

AN Krasnov, MY Mazina, JV Nikolenko, NE Vorobyeva - Cell & Bioscience, 2016 - Springer
Transcriptional activation is a complex, multistage process implemented by hundreds of
proteins. Many transcriptional proteins are organized into coactivator complexes, which …

[HTML][HTML] Genome-wide association of Yorkie with chromatin and chromatin-remodeling complexes

H Oh, M Slattery, L Ma, A Crofts, KP White, RS Mann… - Cell reports, 2013 - cell.com
The Hippo pathway regulates growth through the transcriptional coactivator Yorkie, but how
Yorkie promotes transcription remains poorly understood. We address this by characterizing …

Drosophila Set1 is the major histone H3 lysine 4 trimethyltransferase with role in transcription

MB Ardehali, A Mei, KL Zobeck, M Caron, JT Lis… - The EMBO …, 2011 - embopress.org
Histone H3 lysine 4 trimethylation (H3K4me3) is a major hallmark of promoter‐proximal
histones at transcribed genes. Here, we report that a previously uncharacterized Drosophila …

Damage-responsive elements in Drosophila regeneration

E Vizcaya-Molina, CC Klein, F Serras… - Genome …, 2018 - genome.cshlp.org
One of the most important questions in regenerative biology is to unveil how and when
genes change expression and trigger regeneration programs. The resetting of gene …

Absence of canonical marks of active chromatin in developmentally regulated genes

S Pérez-Lluch, E Blanco, H Tilgner, J Curado… - Nature …, 2015 - nature.com
The interplay of active and repressive histone modifications is assumed to have a key role in
the regulation of gene expression. In contrast to this generally accepted view, we show that …

[HTML][HTML] Productive visualization of high-throughput sequencing data using the SeqCode open portable platform

E Blanco, M González-Ramírez, L Di Croce - Scientific Reports, 2021 - nature.com
Large-scale sequencing techniques to chart genomes are entirely consolidated. Stable
computational methods to perform primary tasks such as quality control, read mapping, peak …

[HTML][HTML] A temporal transcriptional switch governs stem cell division, neuronal numbers, and maintenance of differentiation

N Mora, C Oliva, M Fiers, R Ejsmont, A Soldano… - Developmental Cell, 2018 - cell.com
The importance of producing the correct numbers of neurons during development is
illustrated by both evolutionary enhancement of cognitive capacities in larger brains, and …