Infectious disease mRNA vaccines and a review on epitope prediction for vaccine design

X Cai, JJ Li, T Liu, O Brian, J Li - Briefings in Functional …, 2021 - academic.oup.com
Messenger RNA (mRNA) vaccines have recently emerged as a new type of vaccine
technology, showing strong potential to combat the COVID-19 pandemic. In addition to …

Multi‐perspectives and challenges in identifying B‐cell epitopes

N Kumar, N Bajiya, S Patiyal, GPS Raghava - Protein Science, 2023 - Wiley Online Library
The identification of B‐cell epitopes (BCEs) in antigens is a crucial step in developing
recombinant vaccines or immunotherapies for various diseases. Over the past four decades …

Selecting the suitable resampling strategy for imbalanced data classification regarding dataset properties. An approach based on association models

MS Kraiem, F Sánchez-Hernández… - Applied sciences, 2021 - mdpi.com
In many application domains such as medicine, information retrieval, cybersecurity, social
media, etc., datasets used for inducing classification models often have an unequal …

Prediction of bone metastasis in non-small cell lung cancer based on machine learning

MP Li, WC Liu, BL Sun, NS Zhong, ZL Liu… - Frontiers in …, 2023 - frontiersin.org
Objective The purpose of this paper was to develop a machine learning algorithm with good
performance in predicting bone metastasis (BM) in non-small cell lung cancer (NSCLC) and …

A Quantum Vaccinomics Approach for the Design and Production of MSP4 Chimeric Antigen for the Control of Anaplasma phagocytophilum Infections

J de la Fuente, A Moraga-Fernández, P Alberdi… - Vaccines, 2022 - mdpi.com
Anaplasma phagocytophilum Major surface protein 4 (MSP4) plays a role during infection
and multiplication in host neutrophils and tick vector cells. Recently, vaccination trials with …

DL-TCNN: Deep Learning-based Temporal Convolutional Neural Network for prediction of conformational B-cell epitopes

P Angaitkar, RR Janghel, TP Sahu - 3 Biotech, 2023 - Springer
Prediction of conformational B-cell epitopes (CBCE) is an essential phase for vaccine
design, drug invention, and accurate disease diagnosis. Many laboratorial and …

Advances in antibody discovery from human BCR repertoires

Z Xu, HS Ismanto, H Zhou, DS Saputri… - Frontiers in …, 2022 - frontiersin.org
Antibodies make up an important and growing class of compounds used for the diagnosis or
treatment of disease. While traditional antibody discovery utilized immunization of animals to …

Construction and validation of a machine learning model for the diagnosis of juvenile idiopathic arthritis based on fecal microbiota

JB Tu, WJ Liao, SP Long, MP Li… - Frontiers in Cellular and …, 2024 - frontiersin.org
Purpose Human gut microbiota has been shown to be significantly associated with various
inflammatory diseases. Therefore, this study aimed to develop an excellent auxiliary tool for …

Prediction of hepatic metastasis in esophageal cancer based on machine learning

J Wan, Y Zeng - Scientific Reports, 2024 - nature.com
This study aimed to establish a machine learning (ML) model for predicting hepatic
metastasis in esophageal cancer. We retrospectively analyzed patients with esophageal …

The empirical comparison of machine learning algorithm for the class imbalanced problem in conformational epitope prediction

B Solihah, A Azhari… - JUITA: Jurnal …, 2021 - jurnalnasional.ump.ac.id
A conformational epitope is a part of a protein-based vaccine. It is challenging to identify
using an experiment. A computational model is developed to support identification …