Single-cell proteomics enabled by next-generation sequencing or mass spectrometry

HM Bennett, W Stephenson, CM Rose, S Darmanis - Nature Methods, 2023 - nature.com
In the last decade, single-cell RNA sequencing routinely performed on large numbers of
single cells has greatly advanced our understanding of the underlying heterogeneity of …

Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments

L Gatto, R Aebersold, J Cox, V Demichev, J Derks… - Nature …, 2023 - nature.com
Analyzing proteins from single cells by tandem mass spectrometry (MS) has recently
become technically feasible. While such analysis has the potential to accurately quantify …

Exploration of cell state heterogeneity using single-cell proteomics through sensitivity-tailored data-independent acquisition

V Petrosius, P Aragon-Fernandez, N Üresin… - Nature …, 2023 - nature.com
Single-cell resolution analysis of complex biological tissues is fundamental to capture cell-
state heterogeneity and distinct cellular signaling patterns that remain obscured with …

Exploring functional protein covariation across single cells using nPOP

A Leduc, RG Huffman, J Cantlon, S Khan, N Slavov - Genome Biology, 2022 - Springer
Background Many biological processes, such as cell division cycle and drug resistance, are
reflected in protein covariation across single cells. This covariation can be quantified and …

An automated nanowell-array workflow for quantitative multiplexed single-cell proteomics sample preparation at high sensitivity

C Ctortecka, D Hartlmayr, A Seth, S Mendjan… - Molecular & Cellular …, 2023 - ASBMB
Multiplexed and label-free mass spectrometry–based approaches with single-cell resolution
have attributed surprising heterogeneity to presumed homogenous cell populations. Even …

[HTML][HTML] Recent advances in the field of single-cell proteomics

V Petrosius, EM Schoof - Translational oncology, 2023 - Elsevier
The field of single-cell omics is rapidly progressing. Although DNA and RNA sequencing-
based methods have dominated the field to date, global proteome profiling has also entered …

Rapid, one-step sample processing for label-free single-cell proteomics

SM Johnston, KGI Webber, X Xie… - Journal of the …, 2023 - ACS Publications
Sample preparation for single-cell proteomics is generally performed in a one-pot workflow
with multiple dispensing and incubation steps. These hours-long processes can be labor …

[HTML][HTML] Three-dimensional feature matching improves coverage for single-cell proteomics based on ion mobility filtering

J Woo, GC Clair, SM Williams, S Feng, CF Tsai… - Cell systems, 2022 - cell.com
Single-cell proteomics (scProteomics) promises to advance our understanding of cell
functions within complex biological systems. However, a major challenge of current methods …

A review of the current state of single-cell proteomics and future perspective

R Ahmad, B Budnik - Analytical and Bioanalytical Chemistry, 2023 - Springer
Single-cell methodologies and technologies have started a revolution in biology which until
recently has primarily been limited to deep sequencing and imaging modalities. With the …

SingPro: a knowledge base providing single-cell proteomic data

X Lian, Y Zhang, Y Zhou, X Sun, S Huang… - Nucleic Acids …, 2024 - academic.oup.com
Single-cell proteomics (SCP) has emerged as a powerful tool for detecting cellular
heterogeneity, offering unprecedented insights into biological mechanisms that are masked …