Integrating viral metagenomics into an ecological framework
Viral metagenomics has expanded our knowledge of the ecology of uncultured viruses,
within both environmental (eg, terrestrial and aquatic) and host-associated (eg, plants and …
within both environmental (eg, terrestrial and aquatic) and host-associated (eg, plants and …
Prospects for multi-omics in the microbial ecology of water engineering
Advances in high-throughput sequencing technologies and bioinformatics approaches over
almost the last three decades have substantially increased our ability to explore …
almost the last three decades have substantially increased our ability to explore …
[HTML][HTML] A critical perspective on interpreting amplicon sequencing data in soil ecological research
Microbial community analysis via marker gene amplicon sequencing has become a routine
method in the field of soil research. In this perspective, we discuss technical challenges and …
method in the field of soil research. In this perspective, we discuss technical challenges and …
Diversity and function of methyl-coenzyme M reductase-encoding archaea in Yellowstone hot springs revealed by metagenomics and mesocosm experiments
Metagenomic studies on geothermal environments have been central in recent discoveries
on the diversity of archaeal methane and alkane metabolism. Here, we investigated …
on the diversity of archaeal methane and alkane metabolism. Here, we investigated …
Activity-based, genome-resolved metagenomics uncovers key populations and pathways involved in subsurface conversions of coal to methane
Microbial metabolisms and interactions that facilitate subsurface conversions of recalcitrant
carbon to methane are poorly understood. We deployed an in situ enrichment device in a …
carbon to methane are poorly understood. We deployed an in situ enrichment device in a …
Earthworm stocking density regulates microbial community structure and fatty acid profiles during vermicomposting of lignocellulosic waste: unraveling the microbe …
J Devi, R Pegu, H Mondal, R Roy… - Bioresource …, 2023 - Elsevier
Earthworm-induced microbial enrichment is the key to success in vermitechnology, yet the
influence of initial earthworm stocking density on microbial community profiles in vermibeds …
influence of initial earthworm stocking density on microbial community profiles in vermibeds …
Natural and anthropogenic carbon input affect microbial activity in salt marsh sediment
Salt marshes are dynamic, highly productive ecosystems positioned at the interface between
terrestrial and marine systems. They are exposed to large quantities of both natural and …
terrestrial and marine systems. They are exposed to large quantities of both natural and …
High potential for biomass-degrading enzymes revealed by hot spring metagenomics
Enzyme stability and activity at elevated temperatures are important aspects in
biotechnological industries, such as the conversion of plant biomass into biofuels. In order to …
biotechnological industries, such as the conversion of plant biomass into biofuels. In order to …
Opportunities in optical and electrical single-cell technologies to study microbial ecosystems
F Mermans, V Mattelin, R Van den Eeckhoudt… - Frontiers in …, 2023 - frontiersin.org
New techniques are revolutionizing single-cell research, allowing us to study microbes at
unprecedented scales and in unparalleled depth. This review highlights the state-of-the-art …
unprecedented scales and in unparalleled depth. This review highlights the state-of-the-art …
Tracking de novo protein synthesis in the activated sludge microbiome using BONCAT-FACS
Z Du, SF Behrens - Water Research, 2021 - Elsevier
In order to ensure stable performance of engineered biotechnologies that rely on mixed
microbial community systems, it is important to identify process-specific microbial traits and …
microbial community systems, it is important to identify process-specific microbial traits and …