Persistent Dirac for molecular representation

JJ Wee, G Bianconi, K Xia - Scientific Reports, 2023 - nature.com
Molecular representations are of fundamental importance for the modeling and analysing
molecular systems. The successes in drug design and materials discovery have been …

Persistent spectral based ensemble learning (PerSpect-EL) for protein–protein binding affinity prediction

JJ Wee, K Xia - Briefings in Bioinformatics, 2022 - academic.oup.com
Protein–protein interactions (PPIs) play a significant role in nearly all cellular and biological
activities. Data-driven machine learning models have demonstrated great power in PPIs …

Turing patterns on discrete topologies: from networks to higher-order structures

R Muolo, L Giambagli, H Nakao, D Fanelli… - Proceedings …, 2024 - royalsocietypublishing.org
Nature is a blossoming of regular structures, signature of self-organization of the underlying
microscopic interacting agents. Turing theory of pattern formation is one of the most studied …

Persistent mayer dirac

F Suwayyid, GW Wei - Journal of Physics: Complexity, 2024 - iopscience.iop.org
Topological data analysis (TDA) has made significant progress in developing a new class of
fundamental operators known as the Dirac operator, particularly in topological signals and …

[HTML][HTML] Cauchy–Binet for pseudo-determinants

O Knill - Linear Algebra and its Applications, 2014 - Elsevier
The pseudo-determinant Det (A) of a square matrix A is defined as the product of the
nonzero eigenvalues of A. It is a basis-independent number which is up to a sign the first …

Spin in p-adic AdS/CFT

SS Gubser, C Jepsen, B Trundy - Journal of Physics A …, 2019 - iopscience.iop.org
We study the holographic dual of the simplest notion of spin in a p-adic field theory, namely
Green's functions which involve non-trivial sign characters over the p-adic numbers. In order …

Dirac walks on regular trees

N Delporte, S Sen, R Toriumi - Journal of Physics A …, 2023 - iopscience.iop.org
The study of matter fields on an ensemble of random geometries is a difficult problem still in
need of new methods and ideas. We will follow a point of view inspired by probability theory …

The sphere formula

O Knill - arXiv preprint arXiv:2301.05736, 2023 - arxiv.org
The sphere formula states that in an arbitrary finite abstract simplicial complex, the sum of
the Euler characteristic of unit spheres centered at even-dimensional simplices is equal to …

The Künneth formula for graphs

O Knill - arXiv preprint arXiv:1505.07518, 2015 - arxiv.org
We construct a Cartesian product G x H for finite simple graphs. It satisfies the Kuenneth
formula: H^ k (G x H) is a direct sum of tensor products H^ i (G) x H^ j (G) with i+ j= k and so p …

Universality for Barycentric subdivision

O Knill - arXiv preprint arXiv:1509.06092, 2015 - arxiv.org
The spectrum of the Laplacian of successive Barycentric subdivisions of a graph converges
exponentially fast to a limit which only depends on the clique number of the initial graph and …