[HTML][HTML] Fiber-type shifting in sarcopenia of old age: proteomic profiling of the contractile apparatus of skeletal muscles

P Dowling, S Gargan, D Swandulla… - International Journal of …, 2023 - mdpi.com
The progressive loss of skeletal muscle mass and concomitant reduction in contractile
strength plays a central role in frailty syndrome. Age-related neuronal impairments are …

Gel‐based and gel‐free quantitative proteomics approaches at a glance

C Abdallah, E Dumas-Gaudot, J Renaut… - … journal of plant …, 2012 - Wiley Online Library
Two‐dimensional gel electrophoresis (2‐DE) is widely applied and remains the method of
choice in proteomics; however, pervasive 2‐DE‐related concerns undermine its prospects …

Loss of the Timp gene family is sufficient for the acquisition of the CAF-like cell state

M Shimoda, S Principe, HW Jackson, V Luga… - Nature cell …, 2014 - nature.com
Cancer-associated fibroblasts (CAFs) drive tumour progression, but the emergence of this
cell state is poorly understood. A broad spectrum of metalloproteinases, controlled by the …

Evaluation and improvement of quantification accuracy in isobaric mass tag-based protein quantification experiments

E Ahrné, T Glatter, C Viganò, C Schubert… - Journal of proteome …, 2016 - ACS Publications
The multiplexing capabilities of isobaric mass tag-based protein quantification, such as
Tandem Mass Tags or Isobaric Tag for Relative and Absolute Quantitation have dramatically …

[HTML][HTML] Cell-surface proteomics identifies lineage-specific markers of embryo-derived stem cells

PJ Rugg-Gunn, BJ Cox, F Lanner, P Sharma… - Developmental cell, 2012 - cell.com
The advent of reprogramming and its impact on stem cell biology has renewed interest in
lineage restriction in mammalian embryos, the source of embryonic (ES), epiblast (EpiSC) …

Exploring the membrane proteome—challenges and analytical strategies

AO Helbig, AJR Heck, M Slijper - Journal of proteomics, 2010 - Elsevier
The analysis of proteins in biological membranes forms a major challenge in proteomics.
Despite continuous improvements and the development of more sensitive analytical …

Advances in shotgun proteomics and the analysis of membrane proteomes

JM Gilmore, MP Washburn - Journal of proteomics, 2010 - Elsevier
The emergence of shotgun proteomics has facilitated the numerous biological discoveries
made by proteomic studies. However, comprehensive proteomic analysis remains …

[HTML][HTML] Skeletal muscle proteomics: current approaches, technical challenges and emerging techniques

K Ohlendieck - Skeletal muscle, 2011 - Springer
Background Skeletal muscle fibres represent one of the most abundant cell types in
mammals. Their highly specialised contractile and metabolic functions depend on a large …

The state of rhizospheric science in the era of multi-omics: A practical guide to omics technologies

RA White III, A Rivas-Ubach, MI Borkum, M Köberl… - Rhizosphere, 2017 - Elsevier
Over the past century, the significance of the rhizosphere has been increasingly recognized
by the scientific community. This complex biological system is comprised of vast …

The role of protein and peptide separation before mass spectrometry analysis in clinical proteomics

S Camerini, P Mauri - Journal of chromatography A, 2015 - Elsevier
The purpose of clinical proteomics is to characterise protein profiles of a plethora of
diseases with the aim of finding specific biomarkers. These are particularly valuable for early …