Can language models be used for real-world urban-delivery route optimization?

Y Liu, F Wu, Z Liu, K Wang, F Wang, X Qu - The Innovation, 2023 - cell.com
Language models have contributed to breakthroughs in interdisciplinary research, such as
protein design and molecular dynamics understanding. In this study, we reveal that beyond …

Predicting drug–target binding affinity through molecule representation block based on multi-head attention and skip connection

L Zhang, CC Wang, X Chen - Briefings in Bioinformatics, 2022 - academic.oup.com
Exiting computational models for drug–target binding affinity prediction have much room for
improvement in prediction accuracy, robustness and generalization ability. Most deep …

Automating materials exploration with a semantic knowledge graph for Li‐ion battery cathodes

Z Nie, S Zheng, Y Liu, Z Chen, S Li… - Advanced Functional …, 2022 - Wiley Online Library
The recent marriage of materials science and artificial intelligence has created the need to
extract and collate materials information from the tremendous backlog of academic …

AI and big data for drug discovery

A Kavidopoulou, KN Syrigos, S Makrogkikas… - Trends of Artificial …, 2023 - Springer
The design of new drugs is expensive, laborious, and complicated, and the vast majority of
new drugs fail in clinical trials. Artificial intelligence, machine learning, and big data are tools …

Semantic knowledge graph as a companion for catalyst recommendation

Z Zhang, S Ma, S Zheng, Z Nie, B Wang, K Lei… - National Science …, 2024 - nso-journal.org
Our ability to perceive the correlation of different substances in the world is one of the key
aspects of human intelligence. The passing of this faculty to artificial intelligence (AI) …

Fast searches of large collections of single-cell data using scfind

JTH Lee, N Patikas, VY Kiselev, M Hemberg - Nature methods, 2021 - nature.com
Single-cell technologies have made it possible to profile millions of cells, but for these
resources to be useful they must be easy to query and access. To facilitate interactive and …

COSIFER: a Python package for the consensus inference of molecular interaction networks

M Manica, C Bunne, R Mathis, J Cadow… - …, 2021 - academic.oup.com
The advent of high-throughput technologies has provided researchers with measurements
of thousands of molecular entities and enable the investigation of the internal regulatory …

PCfun: a hybrid computational framework for systematic characterization of protein complex function

VS Sharma, A Fossati, R Ciuffa, M Buljan… - Briefings in …, 2022 - academic.oup.com
In molecular biology, it is a general assumption that the ensemble of expressed molecules,
their activities and interactions determine biological function, cellular states and phenotypes …

Composition-driven symptom phrase recognition for Chinese medical consultation corpora

X Gu, Z Sun, W Zhang - BMC medical informatics and decision making, 2021 - Springer
Background Symptom phrase recognition is essential to improve the use of unstructured
medical consultation corpora for the development of automated question answering …

SSCBDTA: Prediction of Drug-Target Binding Affinity with Secondary Sequences and Multiple Cross-Attention Blocks

HW Zuo, PC Zhou, X Li, H Zhang, L Zhang - 2024 - researchsquare.com
Despite significant progress in existing methods for predicting drug-target binding affinity,
there is still room for improvement in better utilizing molecular sequences and designing …