Plant pan-genomics and its applications
J Shi, Z Tian, J Lai, X Huang - Molecular Plant, 2023 - cell.com
Plant genomes are so highly diverse that a substantial proportion of genomic sequences are
not shared among individuals. The variable DNA sequences, along with the conserved core …
not shared among individuals. The variable DNA sequences, along with the conserved core …
Rice Gene Index: a comprehensive pan-genome database for comparative and functional genomics of Asian rice
Asian rice (Oryza sativa) is the staple food for half the world and is a model crop that has
been extensively studied. It contributes $20% of calories to the human diet (Stein et al …
been extensively studied. It contributes $20% of calories to the human diet (Stein et al …
RicePilaf: a post-GWAS/QTL dashboard to integrate pangenomic, coexpression, regulatory, epigenomic, ontology, pathway, and text-mining information to provide …
AMS Shrestha, MEM Gonzales, PCL Ong… - …, 2024 - academic.oup.com
Background As the number of genome-wide association study (GWAS) and quantitative trait
locus (QTL) mappings in rice continues to grow, so does the already long list of genomic loci …
locus (QTL) mappings in rice continues to grow, so does the already long list of genomic loci …
Deciphering the Genetic Basis of Allelopathy in japonica Rice Cultivated in Temperate Regions Using a Genome-Wide Association Study
J García-Romeral, R Castanera, J Casacuberta… - Rice, 2024 - Springer
Allelopathy has been considered as a natural method of weed control. Despite the nature of
allelochemical compounds has been studied, little is known about the genetic basis …
allelochemical compounds has been studied, little is known about the genetic basis …
Recent advances in sequencing of cereal genomes
Cereal crops are members of the Poaceae family that are grown primarily for their seed,
many of which are staple foods around the globe. Together, maize, rice, wheat, barley …
many of which are staple foods around the globe. Together, maize, rice, wheat, barley …
Integrating pan-omics data in a systems approach for crop improvement: opportunities and challenges
D James, PR Rennya, MD Mallavarapu… - Omics Technologies for …, 2021 - Springer
Ensuring food security for the growing world population amidst the vagaries of nature is an
unrelenting challenge for plant scientists. The utilization of modern tools such as genome …
unrelenting challenge for plant scientists. The utilization of modern tools such as genome …