Handshakes and fights: the regulatory interplay of RNA-binding proteins

E Dassi - Frontiers in molecular biosciences, 2017 - frontiersin.org
What drives the flow of signals controlling the outcome of post-transcriptional regulation of
gene expression? This regulatory layer, presiding to processes ranging from splicing to …

Auto-regulatory feedback by RNA-binding proteins

M Müller-McNicoll, O Rossbach, J Hui… - Journal of molecular …, 2019 - academic.oup.com
RNA-binding proteins (RBPs) are key regulators in post-transcriptional control of gene
expression. Mutations that alter their activity or abundance have been implicated in …

RNA structure drives interaction with proteins

N Sanchez de Groot, A Armaos… - Nature …, 2019 - nature.com
The combination of high-throughput sequencing and in vivo crosslinking approaches leads
to the progressive uncovering of the complex interdependence between cellular …

catRAPID omics: a web server for large-scale prediction of protein–RNA interactions

F Agostini, A Zanzoni, P Klus, D Marchese… - …, 2013 - academic.oup.com
Here we introduce cat RAPID omics, a server for large-scale calculations of protein–RNA
interactions. Our web server allows (i) predictions at proteomic and transcriptomic level;(ii) …

Phase separation drives X-chromosome inactivation: a hypothesis

A Cerase, A Armaos, C Neumayer, P Avner… - Nature structural & …, 2019 - nature.com
The long non-coding RNA Xist induces heterochromatinization of the X chromosome by
recruiting repressive protein complexes to chromatin. Here we gather evidence, from the …

RNA modulates physiological and neuropathological protein phase transitions

JR Mann, CJ Donnelly - Neuron, 2021 - cell.com
Aggregation of RNA-binding proteins (RBPs) is a pathological hallmark of
neurodegenerative disorders like amyotrophic lateral sclerosis (ALS) and frontotemporal …

Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs

DM Ribeiro, A Zanzoni, A Cipriano… - Nucleic acids …, 2018 - academic.oup.com
The human transcriptome contains thousands of long non-coding RNAs (lncRNAs).
Characterizing their function is a current challenge. An emerging concept is that lncRNAs …

The aggregation of mutant p53 produces prion-like properties in cancer

LP Rangel, DCF Costa, TCRG Vieira, JL Silva - Prion, 2014 - Taylor & Francis
The tumor suppressor protein p53 loses its function in more than 50% of human malignant
tumors. Recent studies have suggested that mutant p53 can form aggregates that are …

[HTML][HTML] RNA as a key factor in driving or preventing self-assembly of the TAR DNA-binding protein 43

E Zacco, R Graña-Montes, SR Martin… - Journal of molecular …, 2019 - Elsevier
Amyotrophic lateral sclerosis and frontotemporal lobar degeneration are incurable motor
neuron diseases associated with muscle weakness, paralysis and respiratory failure …

Widespread autogenous mRNA–protein interactions detected by CLIP-seq

TH Kapral, F Farnhammer, W Zhao, ZJ Lu… - Nucleic Acids …, 2022 - academic.oup.com
Autogenous interactions between mRNAs and the proteins they encode are implicated in
cellular feedback-loop regulation, but their extent and mechanistic foundation are unclear. It …