Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences

F Wemheuer, JA Taylor, R Daniel, E Johnston… - Environmental …, 2020 - Springer
Abstract Background Sequencing of 16S rRNA genes has become a powerful technique to
study microbial communities and their responses towards changing environmental …

Compositional changes of sedimentary microbes in the Yangtze River Estuary and their roles in the biochemical cycle

L Liu, F Sun, H Zhao, H Mi, S He, Y Chen, Y Liu… - Science of The Total …, 2021 - Elsevier
Due to the geographical circumstances, the Yangtze River Estuary (YRE) and the adjacent
East China Sea are extensively influenced by both anthropogenic activities and …

Spatial and environmental variables structure sponge symbiont communities

DFR Cleary, ARM Polónia, T Swierts… - Molecular …, 2022 - Wiley Online Library
Understanding the maintenance and origin of beta diversity is a central topic in ecology.
However, the factors that drive diversity patterns and underlying processes remain unclear …

Probiotics reshape the coral microbiome in situ without detectable off-target effects in the surrounding environment

N Delgadillo-Ordoñez, N Garcias-Bonet… - Communications …, 2024 - nature.com
Beneficial microorganisms for corals (BMCs), or probiotics, can enhance coral resilience
against stressors in laboratory trials. However, the ability of probiotics to restructure the coral …

Diversity and functional roles of the symbiotic microbiome associated to marine sponges off Karah Island, Terengganu, Malaysia

Y Hayami, L Ambalavanan, SC Zainathan… - Regional Studies in …, 2023 - Elsevier
Marine sponges harbor a complex microbial consortium that plays important roles in host
metabolisms and the production of chemical compounds. Symbiotic microbial community …

Exploring prokaryotic communities in the guts and mucus of nudibranchs, and their similarity to sediment and seawater microbiomes

T Stuij, DFR Cleary, ARM Polónia, S Putchakarn… - Current …, 2023 - Springer
In the present study, we compared mucus and gut-associated prokaryotic communities from
seven nudibranch species with sediment and seawater from Thai coral reefs using high …

[PDF][PDF] Prokaryotic communities of Indo-Pacific giant barrel sponges are more strongly influenced by geography than host phylogeny

T Swierts, DFR Cleary… - FEMS microbiology …, 2018 - academic.oup.com
Sponges harbor complex communities of microorganisms that carry out essential roles for
the functioning and survival of their hosts. In some cases, genetically related sponges from …

Diversities and Shifts of Microbial Communities Associated with Farmed Oysters (Crassostrea gigas) and Their Surrounding Environments in Laoshan Bay Marine …

G Fang, H Yu, Y Zhang, J Liang, Y Tang, Z Liang - Microorganisms, 2023 - mdpi.com
Pacific oysters (Crassostrea gigas) are widely cultured in Chinese marine ranching with high
economic value. However, mass death of farmed oysters has occurred frequently in recent …

Archaeal communities of low and high microbial abundance sponges inhabiting the remote western Indian Ocean island of Mayotte

ARM Polónia, DFR Cleary, A Gauvin‐Bialecki… - Antonie Van …, 2021 - Springer
Marine sponges are abundant and ecologically important components of coral reefs and
have been shown to harbour exceptionally high microbial densities, which can differ …

An integrative bioinformatics pipeline shows that honeybee‐associated microbiomes are driven primarily by pollen composition

D Chesters, X Liu, KL Bell, MC Orr, T Xie… - Insect …, 2023 - Wiley Online Library
The microbiomes associated with bee nests influence colony health through various
mechanisms, although it is not yet clear how honeybee congeners differ in microbiome …