Metagenomic binning of a marine sponge microbiome reveals unity in defense but metabolic specialization
Marine sponges are ancient metazoans that are populated by distinct and highly diverse
microbial communities. In order to obtain deeper insights into the functional gene repertoire …
microbial communities. In order to obtain deeper insights into the functional gene repertoire …
[HTML][HTML] In Situ Field Sequencing and Life Detection in Remote (79°26′N) Canadian High Arctic Permafrost Ice Wedge Microbial Communities
J Goordial, I Altshuler, K Hindson… - Frontiers in …, 2017 - frontiersin.org
Significant progress is being made in the development of the next generation of low cost life
detection instrumentation with much smaller size, mass and energy requirements. Here, we …
detection instrumentation with much smaller size, mass and energy requirements. Here, we …
Iso-Seq allows genome-independent transcriptome profiling of grape berry development
A Minio, M Massonnet… - G3: Genes …, 2019 - academic.oup.com
Transcriptomics has been widely applied to study grape berry development. With few
exceptions, transcriptomic studies in grape are performed using the available genome …
exceptions, transcriptomic studies in grape are performed using the available genome …
Implementation and data analysis of Tn-seq, whole-genome resequencing, and single-molecule real-time sequencing for bacterial genetics
PE Burby, TM Nye, JW Schroeder… - Journal of …, 2017 - Am Soc Microbiol
Few discoveries have been more transformative to the biological sciences than the
development of DNA sequencing technologies. The rapid advancement of sequencing and …
development of DNA sequencing technologies. The rapid advancement of sequencing and …
[HTML][HTML] How single molecule real-time sequencing and haplotype phasing have enabled reference-grade diploid genome assembly of wine grapes
Domesticated grapevines (Vitis vinifera) have relatively small genomes of about 500 Mb
(Lodhi and Reisch, 1995; Jaillon et al., 2007; Velasco et al., 2007), which is similar to other …
(Lodhi and Reisch, 1995; Jaillon et al., 2007; Velasco et al., 2007), which is similar to other …
[HTML][HTML] Complete genome sequence of 3-chlorobenzoate-degrading bacterium Cupriavidus necator NH9 and reclassification of the strains of the genera Cupriavidus …
R Moriuchi, H Dohra, Y Kanesaki… - Frontiers in Microbiology, 2019 - frontiersin.org
Cupriavidus necator NH9, a 3-chlorobenzoate (3-CB)-degrading bacterium, was isolated
from soil in Japan. In this study, the complete genome sequence of NH9 was obtained via …
from soil in Japan. In this study, the complete genome sequence of NH9 was obtained via …
[HTML][HTML] Whole-genome comparisons of Penicillium spp. reveals secondary metabolic gene clusters and candidate genes associated with fungal aggressiveness …
Blue mold is a postharvest rot of pomaceous fruits caused by Penicillium expansum and a
number of other Penicillium species. The genome of the highly aggressive P. expansum …
number of other Penicillium species. The genome of the highly aggressive P. expansum …
[HTML][HTML] Evolution End Classification of tfd Gene Clusters Mediating Bacterial Degradation of 2,4-Dichlorophenoxyacetic Acid (2,4-D)
T Iasakov - International Journal of Molecular Sciences, 2023 - mdpi.com
The tfd (tfd I and tfd II) are gene clusters originally discovered in plasmid pJP4 which are
involved in the bacterial degradation of 2, 4-dichlorophenoxyacetic acid (2, 4-D) via the …
involved in the bacterial degradation of 2, 4-dichlorophenoxyacetic acid (2, 4-D) via the …
Isoform-scale annotation and expression profiling of the Cabernet Sauvignon transcriptome using single-molecule sequencing of full-length cDNA
Transcriptomics has been widely applied to study grape berry development. With few
exceptions, transcriptomic studies in grape are performed using the available genome …
exceptions, transcriptomic studies in grape are performed using the available genome …
Future perspectives of computational biology: demanding shifts in analytical thinking to unfold biological complexities
With available knowledge and databases, the mining of more information has driven the last
decade of computational biology. We validated the existing known information with omics …
decade of computational biology. We validated the existing known information with omics …