Metagenomic binning of a marine sponge microbiome reveals unity in defense but metabolic specialization

BM Slaby, T Hackl, H Horn, K Bayer… - The ISME …, 2017 - academic.oup.com
Marine sponges are ancient metazoans that are populated by distinct and highly diverse
microbial communities. In order to obtain deeper insights into the functional gene repertoire …

[HTML][HTML] In Situ Field Sequencing and Life Detection in Remote (79°26′N) Canadian High Arctic Permafrost Ice Wedge Microbial Communities

J Goordial, I Altshuler, K Hindson… - Frontiers in …, 2017 - frontiersin.org
Significant progress is being made in the development of the next generation of low cost life
detection instrumentation with much smaller size, mass and energy requirements. Here, we …

Iso-Seq allows genome-independent transcriptome profiling of grape berry development

A Minio, M Massonnet… - G3: Genes …, 2019 - academic.oup.com
Transcriptomics has been widely applied to study grape berry development. With few
exceptions, transcriptomic studies in grape are performed using the available genome …

Implementation and data analysis of Tn-seq, whole-genome resequencing, and single-molecule real-time sequencing for bacterial genetics

PE Burby, TM Nye, JW Schroeder… - Journal of …, 2017 - Am Soc Microbiol
Few discoveries have been more transformative to the biological sciences than the
development of DNA sequencing technologies. The rapid advancement of sequencing and …

[HTML][HTML] How single molecule real-time sequencing and haplotype phasing have enabled reference-grade diploid genome assembly of wine grapes

A Minio, J Lin, BS Gaut, D Cantu - Frontiers in plant science, 2017 - frontiersin.org
Domesticated grapevines (Vitis vinifera) have relatively small genomes of about 500 Mb
(Lodhi and Reisch, 1995; Jaillon et al., 2007; Velasco et al., 2007), which is similar to other …

[HTML][HTML] Complete genome sequence of 3-chlorobenzoate-degrading bacterium Cupriavidus necator NH9 and reclassification of the strains of the genera Cupriavidus …

R Moriuchi, H Dohra, Y Kanesaki… - Frontiers in Microbiology, 2019 - frontiersin.org
Cupriavidus necator NH9, a 3-chlorobenzoate (3-CB)-degrading bacterium, was isolated
from soil in Japan. In this study, the complete genome sequence of NH9 was obtained via …

[HTML][HTML] Whole-genome comparisons of Penicillium spp. reveals secondary metabolic gene clusters and candidate genes associated with fungal aggressiveness …

G Wu, WM Jurick II, FJ Lichtner, H Peng, G Yin… - PeerJ, 2019 - peerj.com
Blue mold is a postharvest rot of pomaceous fruits caused by Penicillium expansum and a
number of other Penicillium species. The genome of the highly aggressive P. expansum …

[HTML][HTML] Evolution End Classification of tfd Gene Clusters Mediating Bacterial Degradation of 2,4-Dichlorophenoxyacetic Acid (2,4-D)

T Iasakov - International Journal of Molecular Sciences, 2023 - mdpi.com
The tfd (tfd I and tfd II) are gene clusters originally discovered in plasmid pJP4 which are
involved in the bacterial degradation of 2, 4-dichlorophenoxyacetic acid (2, 4-D) via the …

Isoform-scale annotation and expression profiling of the Cabernet Sauvignon transcriptome using single-molecule sequencing of full-length cDNA

A Minio, M Massonnet, AM Vondras… - bioRxiv, 2018 - biorxiv.org
Transcriptomics has been widely applied to study grape berry development. With few
exceptions, transcriptomic studies in grape are performed using the available genome …

Future perspectives of computational biology: demanding shifts in analytical thinking to unfold biological complexities

HJ Purohit, H Tikariha, VC Kalia - Soft computing for biological systems, 2018 - Springer
With available knowledge and databases, the mining of more information has driven the last
decade of computational biology. We validated the existing known information with omics …