[HTML][HTML] Big data for a small world: a review on databases and resources for studying microbiomes

P Sengupta, SKM Sivabalan, A Mahesh… - Journal of the Indian …, 2023 - Springer
Microorganisms are ubiquitous in nature and form complex community networks to survive
in various environments. This community structure depends on numerous factors like …

[HTML][HTML] High-efficiency plastome base editing in rice with TAL cytosine deaminase

R Li, SN Char, B Liu, H Liu, X Li, B Yang - Molecular Plant, 2021 - cell.com
Genome editing has been widely applied in nuclei but not so in organelles such as the
mitochondria and chloroplasts. The challenge for organelle genome editing is the limited …

[PDF][PDF] Emergence of novel RNA-editing sites by changes in the binding affinity of a conserved PPR protein

FV Loiacono, D Walther, S Seeger… - Molecular Biology …, 2022 - academic.oup.com
RNA editing converts cytidines to uridines in plant organellar transcripts. Editing typically
restores codons for conserved amino acids. During evolution, specific C-to-U editing sites …

[HTML][HTML] Chloroplast genome assemblies and comparative analyses of commercially important Vaccinium berry crops

AM Fahrenkrog, GO Matsumoto, K Toth… - Scientific Reports, 2022 - nature.com
Vaccinium is a large genus of shrubs that includes a handful of economically important berry
crops. Given the numerous hybridizations and polyploidization events, the taxonomy of this …

[HTML][HTML] Towards comprehensive integration and curation of chloroplast genomes

Z Hua, D Tian, C Jiang, S Song, Z Chen… - Plant biotechnology …, 2022 - ncbi.nlm.nih.gov
accepted 4 September 2022.* Correspondence (Tel+ 86 (10) 64087649; fax+ 86 (10)
64087649; email y_yuan0732@ 163. com; Tel+ 86 (10) 84097298; fax+ 86 (10) 84097720; …

[HTML][HTML] Complete pan-plastome sequences enable high resolution phylogenetic classification of sugar beet and closely related crop wild relatives

K Sielemann, B Pucker, N Schmidt, P Viehöver… - BMC genomics, 2022 - Springer
Background As the major source of sugar in moderate climates, sugar-producing beets
(Beta vulgaris subsp. vulgaris) have a high economic value. However, the low genetic …

A Machine Learning Framework Identifies Plastid-Encoded Proteins Harboring C3 and C4 Distinguishing Sequence Information

N Yogadasan, AC Doxey… - Genome Biology and …, 2023 - academic.oup.com
C4 photosynthesis is known to have at least 61 independent origins across plant lineages
making it one of the most notable examples of convergent evolution. Of the> 60 independent …

[HTML][HTML] Complete Chloroplast Genomes of 14 Subspecies of D. glomerata: Phylogenetic and Comparative Genomic Analyses

Y Jiao, G Feng, L Huang, G Nie, Z Li, Y Peng, D Li… - Genes, 2022 - mdpi.com
Orchardgrass (Dactylis glomerata L.) is a species in the Gramineae family that is highly
important economically and valued for its role in ecology. However, the phylogeny and …

[HTML][HTML] Mangrove tree (Avicennia marina): insight into chloroplast genome evolutionary divergence and its comparison with related species from family Acanthaceae

S Asaf, AL Khan, M Numan, A Al-Harrasi - Scientific Reports, 2021 - nature.com
Avicennia marina (family Acanthaceae) is a halotolerant woody shrub that grows wildly and
cultivated in the coastal regions. Despite its importance, the species suffers from lack of …

[HTML][HTML] Comparative genomics analysis of endangered wild Egyptian Moringa peregrina (Forssk.) Fiori plastome, with implications for the evolution of Brassicales …

HAM AbdAlla, VO Wanga, EM Mkala, SG Amenu… - Frontiers in …, 2023 - frontiersin.org
Moringa is a mono-genus belonging to the Moringaceae family, which includes 13 species.
Among them, Moringa peregrina is plant species native to the Arabian Peninsula, Southern …