[HTML][HTML] Polyphenol-mediated gut microbiota modulation: toward prebiotics and further

MC Rodríguez-Daza, EC Pulido-Mateos… - Frontiers in …, 2021 - frontiersin.org
The genome of gut microbes encodes a collection of enzymes whose metabolic functions
contribute to the bioavailability and bioactivity of unabsorbed (poly) phenols. Datasets from …

Advancing human gut microbiota research by considering gut transit time

N Procházková, G Falony, LO Dragsted, TR Licht… - Gut, 2023 - gut.bmj.com
Accumulating evidence indicates that gut transit time is a key factor in shaping the gut
microbiota composition and activity, which are linked to human health. Both population-wide …

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

T Van Den Bossche, BJ Kunath, K Schallert… - Nature …, 2021 - nature.com
Metaproteomics has matured into a powerful tool to assess functional interactions in
microbial communities. While many metaproteomic workflows are available, the impact of …

Dynamic metabolic interactions and trophic roles of human gut microbes identified using a minimal microbiome exhibiting ecological properties

SA Shetty, I Kostopoulos, SY Geerlings… - The ISME …, 2022 - academic.oup.com
Microbe–microbe interactions in the human gut are influenced by host-derived glycans and
diet. The high complexity of the gut microbiome poses a major challenge for unraveling the …

Intestinal fermentation in vitro models to study food-induced gut microbiota shift: an updated review

L Nissen, F Casciano, A Gianotti - FEMS Microbiology Letters, 2020 - academic.oup.com
In vitro gut fermentation models were firstly introduced in nutrition and applied microbiology
research back in the 1990s. These models have improved greatly during time, mainly over …

[HTML][HTML] MAIT cell activation is reduced by direct and microbiota-mediated exposure to bisphenols

JL Krause, B Engelmann, UN Da Rocha… - Environment …, 2022 - Elsevier
Oral uptake is the primary route of human bisphenol exposure, resulting in an exposure of
the intestinal microbiota and intestine-associated immune cells. Therefore, we compared the …

Designs and methodologies to recreate in vitro human gut microbiota models

F Biagini, C Daddi, M Calvigioni, C De Maria… - Bio-Design and …, 2023 - Springer
The human gut microbiota is widely considered to be a metabolic organ hidden within our
bodies, playing a crucial role in the host's physiology. Several factors affect its composition …

[HTML][HTML] The glyphosate formulation Roundup® LB plus influences the global metabolome of pig gut microbiota in vitro

JL Krause, SB Haange, SS Schäpe… - Science of the Total …, 2020 - Elsevier
Glyphosate is the world's most widely used herbicide, and its potential side effects on the
intestinal microbiota of various animals, from honeybees to livestock and humans, are …

Enrichment and identification of small proteins in a simplified human gut microbiome

H Petruschke, J Anders, PF Stadler, N Jehmlich… - Journal of …, 2020 - Elsevier
Small proteins (sProteins) with a size of 100 amino acids and less are involved in major
biological processes and play an important role in different bacteria. Despite the increasing …

MetaLab-MAG: A metaproteomic data analysis platform for genome-level characterization of microbiomes from the metagenome-assembled genomes database

K Cheng, Z Ning, L Li, X Zhang… - Journal of Proteome …, 2022 - ACS Publications
The studies of microbial communities have drawn increased attention in various research
fields such as agriculture, environment, and human health. Recently, metaproteomics has …