Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap

T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …

[HTML][HTML] Applications of environmental DNA (eDNA) in agricultural systems: Current uses, limitations and future prospects

JH Kestel, DL Field, PW Bateman, NE White… - Science of the Total …, 2022 - Elsevier
Global food production, food supply chains and food security are increasingly stressed by
human population growth and loss of arable land, becoming more vulnerable to …

[HTML][HTML] Cautionary notes on the use of co-occurrence networks in soil ecology

M Goberna, M Verdú - Soil Biology and Biochemistry, 2022 - Elsevier
Soil ecology is witnessing exponential growth in the number of studies using co-occurrence
network analysis. Researchers reconstruct networks based on the co-occurrence of taxa or …

[HTML][HTML] Benthic eDNA metabarcoding provides accurate assessments of impact from oil extraction, and ecological insights

A Lanzén, TG Dahlgren, A Bagi, JT Hestetun - Ecological Indicators, 2021 - Elsevier
Apart from its contribution to climate change, offshore oil and gas extraction is also a
potential threat to the diversity and function of marine ecosystems. Routine monitoring of the …

The functional microbiome of grapevine throughout plant evolutionary history and lifetime

P Fournier, L Pellan, D Barroso-Bergadà… - Advances in Ecological …, 2022 - Elsevier
European grapevine is a complex holobiont composed of two plant genomes, that of the
scion (Vitis vinifera L.) and the rootstock (Vitis spp.), and a multitude of microbial genomes …

Quercus ilex Phyllosphere Microbiome Environmental-Driven Structure and Composition Shifts in a Mediterranean Contex

A Postiglione, A Prigioniero, D Zuzolo, M Tartaglia… - Plants, 2022 - mdpi.com
The intra-and interdomain phyllosphere microbiome features of Quercus ilex L. in a
Mediterranean context is reported. We hypothesized that the main driver of the phyllosphere …

Evaluation of Different Phyllosphere Sample Types for Parallel Metabarcoding of Fungi and Oomycetes in Vitis vinifera

FH Behrens, M Fischer - Phytobiomes Journal, 2022 - Am Phytopath Society
Metabarcoding is an effective and cost-efficient approach to study environmental
microbiomes and has become a standard method in studying microbial community …

Harnessing biodiversity and ecosystem services to safeguard multifunctional vineyard landscapes in a global change context

A Rusch, L Beaumelle, B Giffard, AA Ugaglia - Advances in Ecological …, 2021 - Elsevier
For decades, and at global scales, vineyard landscapes have experienced a profound
intensification of management. These socio-ecosystems are now facing major …

Microbial co-occurrence networks as a biomonitoring tool for aquatic environments: a review

A Codello, GC Hose, A Chariton - Marine and Freshwater …, 2022 - CSIRO Publishing
Aquatic microbial ecosystems are increasingly under threat from human activities,
highlighting the need to for the development and application of biomonitoring tools that can …

Coupling ecological network analysis with high-throughput sequencing-based surveys: Lessons from the next-generation biomonitoring project

M Dubart, P Alonso, D Barroso-Bergadà… - Advances in ecological …, 2021 - Elsevier
Biomonitoring ecosystems is necessary in order to evaluate risks and to efficiently manage
ecosystems and their associated services. Agrosystems are the target of multiple stressors …