Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap
T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
[HTML][HTML] Applications of environmental DNA (eDNA) in agricultural systems: Current uses, limitations and future prospects
Global food production, food supply chains and food security are increasingly stressed by
human population growth and loss of arable land, becoming more vulnerable to …
human population growth and loss of arable land, becoming more vulnerable to …
[HTML][HTML] Cautionary notes on the use of co-occurrence networks in soil ecology
M Goberna, M Verdú - Soil Biology and Biochemistry, 2022 - Elsevier
Soil ecology is witnessing exponential growth in the number of studies using co-occurrence
network analysis. Researchers reconstruct networks based on the co-occurrence of taxa or …
network analysis. Researchers reconstruct networks based on the co-occurrence of taxa or …
[HTML][HTML] Benthic eDNA metabarcoding provides accurate assessments of impact from oil extraction, and ecological insights
Apart from its contribution to climate change, offshore oil and gas extraction is also a
potential threat to the diversity and function of marine ecosystems. Routine monitoring of the …
potential threat to the diversity and function of marine ecosystems. Routine monitoring of the …
The functional microbiome of grapevine throughout plant evolutionary history and lifetime
P Fournier, L Pellan, D Barroso-Bergadà… - Advances in Ecological …, 2022 - Elsevier
European grapevine is a complex holobiont composed of two plant genomes, that of the
scion (Vitis vinifera L.) and the rootstock (Vitis spp.), and a multitude of microbial genomes …
scion (Vitis vinifera L.) and the rootstock (Vitis spp.), and a multitude of microbial genomes …
Quercus ilex Phyllosphere Microbiome Environmental-Driven Structure and Composition Shifts in a Mediterranean Contex
A Postiglione, A Prigioniero, D Zuzolo, M Tartaglia… - Plants, 2022 - mdpi.com
The intra-and interdomain phyllosphere microbiome features of Quercus ilex L. in a
Mediterranean context is reported. We hypothesized that the main driver of the phyllosphere …
Mediterranean context is reported. We hypothesized that the main driver of the phyllosphere …
Evaluation of Different Phyllosphere Sample Types for Parallel Metabarcoding of Fungi and Oomycetes in Vitis vinifera
FH Behrens, M Fischer - Phytobiomes Journal, 2022 - Am Phytopath Society
Metabarcoding is an effective and cost-efficient approach to study environmental
microbiomes and has become a standard method in studying microbial community …
microbiomes and has become a standard method in studying microbial community …
Harnessing biodiversity and ecosystem services to safeguard multifunctional vineyard landscapes in a global change context
For decades, and at global scales, vineyard landscapes have experienced a profound
intensification of management. These socio-ecosystems are now facing major …
intensification of management. These socio-ecosystems are now facing major …
Microbial co-occurrence networks as a biomonitoring tool for aquatic environments: a review
A Codello, GC Hose, A Chariton - Marine and Freshwater …, 2022 - CSIRO Publishing
Aquatic microbial ecosystems are increasingly under threat from human activities,
highlighting the need to for the development and application of biomonitoring tools that can …
highlighting the need to for the development and application of biomonitoring tools that can …
Coupling ecological network analysis with high-throughput sequencing-based surveys: Lessons from the next-generation biomonitoring project
M Dubart, P Alonso, D Barroso-Bergadà… - Advances in ecological …, 2021 - Elsevier
Biomonitoring ecosystems is necessary in order to evaluate risks and to efficiently manage
ecosystems and their associated services. Agrosystems are the target of multiple stressors …
ecosystems and their associated services. Agrosystems are the target of multiple stressors …