Innovative and rapid antimicrobial susceptibility testing systems

A van Belkum, CAD Burnham, JWA Rossen… - Nature Reviews …, 2020 - nature.com
Antimicrobial resistance (AMR) is a major threat to human health worldwide, and the rapid
detection and quantification of resistance, combined with antimicrobial stewardship, are key …

Evolutionary dynamics of natural product biosynthesis in bacteria

MG Chevrette, K Gutiérrez-García… - Natural product …, 2020 - pubs.rsc.org
Covering: 2008 up to 2019 The forces of biochemical adaptive evolution operate at the level
of genes, manifesting in complex phenotypes and the global biodiversity of proteins and …

[HTML][HTML] Experimental characterization of de novo proteins and their unevolved random-sequence counterparts

B Heames, F Buchel, M Aubel, V Tretyachenko… - Nature ecology & …, 2023 - nature.com
De novo gene emergence provides a route for new proteins to be formed from previously
non-coding DNA. Proteins born in this way are considered random sequences and typically …

[HTML][HTML] The origins and functions of de novo genes: Against all odds?

CM Weisman - Journal of Molecular Evolution, 2022 - Springer
Abstract “De novo” genes evolve from previously non-genic DNA. This strikes many of us as
remarkable, because it seems extraordinarily unlikely that random sequence would produce …

[HTML][HTML] De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences

N Vakirlis, O Acar, B Hsu, N Castilho Coelho… - Nature …, 2020 - nature.com
Recent evidence demonstrates that novel protein-coding genes can arise de novo from non-
genic loci. This evolutionary innovation is thought to be facilitated by the pervasive …

[HTML][HTML] A novel type of colistin resistance genes selected from random sequence space

M Knopp, AM Babina, JS Gudmundsdóttir… - PLoS …, 2021 - journals.plos.org
Antibiotic resistance is a rapidly increasing medical problem that severely limits the success
of antibiotic treatments, and the identification of resistance determinants is key for …

Misunderstandings and misinterpretations: Antimicrobial use and resistance in salmon aquaculture

FC Cabello, AR Millanao… - Environmental …, 2023 - Wiley Online Library
The exponential growth of aquaculture over the past 30 years has been accompanied by a
parallel increase in the use of antimicrobials. This widespread use has had negative effects …

[HTML][HTML] Harder, better, faster, stronger: Colistin resistance mechanisms in Escherichia coli

AB Janssen, W van Schaik - PLoS Genetics, 2021 - journals.plos.org
Harder, better, faster, stronger: Colistin resistance mechanisms in Escherichia coli | PLOS
Genetics Skip to main content Advertisement PLOS Genetics Browse Current Issue Journal …

Rescue of Escherichia coli auxotrophy by de novo small proteins

AM Babina, S Surkov, W Ye, J Jerlström-Hultqvist… - Elife, 2023 - elifesciences.org
Increasing numbers of small proteins with diverse physiological roles are being identified
and characterized in both prokaryotic and eukaryotic systems, but the origins and evolution …

[HTML][HTML] Charged amino acids contribute to ZorO toxicity

B Bogati, SFH Shore, TD Nipper, O Stoiculescu… - Toxins, 2022 - mdpi.com
Chromosomally encoded toxin-antitoxin systems have been increasingly identified and
characterized across bacterial species over the past two decades. Overproduction of the …