Conformational ensembles of intrinsically disordered proteins and flexible multidomain proteins
FE Thomasen, K Lindorff-Larsen - Biochemical Society …, 2022 - portlandpress.com
Intrinsically disordered proteins (IDPs) and multidomain proteins with flexible linkers show a
high level of structural heterogeneity and are best described by ensembles consisting of …
high level of structural heterogeneity and are best described by ensembles consisting of …
[HTML][HTML] Nuclear magnetic resonance/single molecule fluorescence combinations to study dynamic protein systems
IM Vedel, A Papagiannoula, S Naudi-Fabra… - Current Opinion in …, 2023 - Elsevier
Many proteins require different structural states or conformations for function, and
intrinsically disordered proteins, ie proteins without stable three-dimensional structure, are …
intrinsically disordered proteins, ie proteins without stable three-dimensional structure, are …
Driving forces behind phase separation of the carboxy-terminal domain of RNA polymerase II
D Flores-Solis, IP Lushpinskaia, AA Polyansky… - Nature …, 2023 - nature.com
Eukaryotic gene regulation and pre-mRNA transcription depend on the carboxy-terminal
domain (CTD) of RNA polymerase (Pol) II. Due to its highly repetitive, intrinsically disordered …
domain (CTD) of RNA polymerase (Pol) II. Due to its highly repetitive, intrinsically disordered …
A natural polyphenol activates and enhances GPX4 to mitigate amyloid-β induced ferroptosis in Alzheimer's disease
Ferroptosis, an iron-dependent cell death, plays a crucial role in the pathology of
Alzheimer's disease (AD). Several characteristics of AD, including excessive iron …
Alzheimer's disease (AD). Several characteristics of AD, including excessive iron …
IDPConformerGenerator: a flexible software suite for sampling the conformational space of disordered protein states
The power of structural information for informing biological mechanisms is clear for stable
folded macromolecules, but similar structure–function insight is more difficult to obtain for …
folded macromolecules, but similar structure–function insight is more difficult to obtain for …
[HTML][HTML] Structural ensembles of disordered proteins from hierarchical chain growth and simulation
Disordered proteins and nucleic acids play key roles in cellular function and disease. Here,
we review recent advances in the computational exploration of the conformational dynamics …
we review recent advances in the computational exploration of the conformational dynamics …
Network of hotspot interactions cluster tau amyloid folds
V Mullapudi, J Vaquer-Alicea, V Bommareddy… - Nature …, 2023 - nature.com
Cryogenic electron microscopy has revealed unprecedented molecular insight into the
conformations of β-sheet-rich protein amyloids linked to neurodegenerative diseases. It …
conformations of β-sheet-rich protein amyloids linked to neurodegenerative diseases. It …
Highly selective butyrylcholinesterase inhibitors related to Amaryllidaceae alkaloids-Design, synthesis, and biological evaluation
F Pidany, J Kroustkova, A Al Mamun… - European Journal of …, 2023 - Elsevier
Butyrylcholinesterase (BChE) is one of the most frequently implicated enzymes in the
advanced stage of Alzheimer's disease (AD). As part of our endeavors to develop new drug …
advanced stage of Alzheimer's disease (AD). As part of our endeavors to develop new drug …
The biophysics of disordered proteins from the point of view of single-molecule fluorescence spectroscopy
J Cubuk, MD Stuchell-Brereton… - Essays in …, 2022 - portlandpress.com
Intrinsically disordered proteins (IDPs) and regions (IDRs) have emerged as key players
across many biological functions and diseases. Differently from structured proteins …
across many biological functions and diseases. Differently from structured proteins …
Hierarchical assembly of single-stranded RNA
Single-stranded RNA (ssRNA) plays a major role in the flow of genetic information–most
notably, in the form of messenger RNA (mRNA)–and in the regulation of biological …
notably, in the form of messenger RNA (mRNA)–and in the regulation of biological …