Leaf growth–complex regulation of a seemingly simple process

M Schneider, M Van Bel, D Inzé… - The Plant …, 2024 - Wiley Online Library
Understanding the underlying mechanisms of plant development is crucial to successfully
steer or manipulate plant growth in a targeted manner. Leaves, the primary sites of …

Single-cell transcriptomics reveals heterogeneity in plant responses to the environment: a focus on biotic and abiotic interactions

R Tenorio Berrío, M Dubois - Journal of Experimental Botany, 2024 - academic.oup.com
Biotic and abiotic environmental cues are major factors influencing plant growth and
productivity. Interactions with biotic (eg symbionts and pathogens) and abiotic (eg changes …

Voice from both sides: a molecular dialogue between transcriptional activators and repressors in seed-to-seedling transition and crop adaptation

D Go, B Lu, M Alizadeh, S Gazzarrini… - Frontiers in Plant …, 2024 - frontiersin.org
High-quality seeds provide valuable nutrients to human society and ensure successful
seedling establishment. During maturation, seeds accumulate storage compounds that are …

Recent advances in exploring transcriptional regulatory landscape of crops

Q Huo, R Song, Z Ma - Frontiers in Plant Science, 2024 - frontiersin.org
Crop breeding entails developing and selecting plant varieties with improved agronomic
traits. Modern molecular techniques, such as genome editing, enable more efficient …

MINI-EX version 2: cell-type-specific gene regulatory network inference using an integrative single-cell transcriptomics approach

J Staut, N Manosalva Perez, T Depuydt, K Vandepoele… - bioRxiv, 2023 - biorxiv.org
Understanding and predicting cell-type-specific gene regulatory networks (GRNs) is
essential for unraveling the complex interactions between transcription factors (TFs) that …

Phenotypic variation in maize can be largely explained by genetic variation at transcription factor binding sites

J Engelhorn, SJ Snodgrass, A Kok, AS Seetharam… - bioRxiv, 2023 - biorxiv.org
Comprehensive maps of functional variation at transcription factor (TF) binding sites (cis-
elements) are crucial for elucidating how genotype shapes phenotype. Here we report the …

Single nuclei multiomics reveals the drought-driven gene regulatory atlas in Arabidopsis

J Liu, A Majeed, N Kumar, KM Pajerowska-Mukhtar… - bioRxiv, 2024 - biorxiv.org
The regulation of gene expression in plant responses to drought has been thoroughly
investigated in previous studies. Despite this, a detailed understanding of the cell type …

A map of integrated cis-regulatory elements enhances gene regulatory analysis in maize

N Manosalva Perez, J Staut, A Matres Ferrando… - bioRxiv, 2024 - biorxiv.org
Cis-regulatory elements (CREs) are non-coding DNA sequences that modulate gene
expression. Their identification is critical to study the transcriptional regulation of genes …