Beyond editing: repurposing CRISPR–Cas9 for precision genome regulation and interrogation

AA Dominguez, WA Lim, LS Qi - Nature reviews Molecular cell biology, 2016 - nature.com
The bacterial CRISPR–Cas9 system has emerged as a multifunctional platform for
sequence-specific regulation of gene expression. This Review describes the development of …

Specification and epigenetic programming of the human germ line

WWC Tang, T Kobayashi, N Irie, S Dietmann… - Nature Reviews …, 2016 - nature.com
Primordial germ cells (PGCs), the precursors of sperm and eggs, are established in
perigastrulation-stage embryos in mammals. Signals from extra-embryonic tissues induce a …

Rolling back human pluripotent stem cells to an eight-cell embryo-like stage

MA Mazid, C Ward, Z Luo, C Liu, Y Li, Y Lai, L Wu, J Li… - Nature, 2022 - nature.com
After fertilization, the quiescent zygote experiences a burst of genome activation that initiates
a short-lived totipotent state. Understanding the process of totipotency in human cells would …

Multi-omics profiling of mouse gastrulation at single-cell resolution

R Argelaguet, SJ Clark, H Mohammed, LC Stapel… - Nature, 2019 - nature.com
Formation of the three primary germ layers during gastrulation is an essential step in the
establishment of the vertebrate body plan and is associated with major transcriptional …

Derivation of pluripotent stem cells with in vivo embryonic and extraembryonic potency

Y Yang, B Liu, J Xu, J Wang, J Wu, C Shi, Y Xu, J Dong… - Cell, 2017 - cell.com
Of all known cultured stem cell types, pluripotent stem cells (PSCs) sit atop the landscape of
developmental potency and are characterized by their ability to generate all cell types of an …

Functional annotation of native enhancers with a Cas9–histone demethylase fusion

NA Kearns, H Pham, B Tabak, RM Genga… - Nature …, 2015 - nature.com
Understanding of mammalian enhancers is limited by the lack of a technology to rapidly and
thoroughly test the cell type–specific function. Here, we use a nuclease-deficient Cas9 …

Systematic identification of culture conditions for induction and maintenance of naive human pluripotency

TW Theunissen, BE Powell, H Wang, M Mitalipova… - Cell stem cell, 2014 - cell.com
Embryonic stem cells (ESCs) of mice and humans have distinct molecular and biological
characteristics, raising the question of whether an earlier," naive" state of pluripotency may …

Derivation of novel human ground state naive pluripotent stem cells

O Gafni, L Weinberger, AAF Mansour, YS Manor… - Nature, 2013 - nature.com
Mouse embryonic stem (ES) cells are isolated from the inner cell mass of blastocysts, and
can be preserved in vitro in a naive inner-cell-mass-like configuration by providing …

Chromatin analysis in human early development reveals epigenetic transition during ZGA

J Wu, J Xu, B Liu, G Yao, P Wang, Z Lin, B Huang… - Nature, 2018 - nature.com
Upon fertilization, drastic chromatin reorganization occurs during preimplantation
development. However, the global chromatin landscape and its molecular dynamics in this …

A unique chromatin signature uncovers early developmental enhancers in humans

A Rada-Iglesias, R Bajpai, T Swigut, SA Brugmann… - Nature, 2011 - nature.com
Cell-fate transitions involve the integration of genomic information encoded by regulatory
elements, such as enhancers, with the cellular environment,. However, identification of …