Roles of eukaryotic topoisomerases in transcription, replication and genomic stability

Y Pommier, Y Sun, SN Huang, JL Nitiss - Nature reviews Molecular cell …, 2016 - nature.com
Topoisomerases introduce transient DNA breaks to relax supercoiled DNA, remove
catenanes and enable chromosome segregation. Human cells encode six topoisomerases …

G-quadruplex–R-loop interactions and the mechanism of anticancer G-quadruplex binders

G Miglietta, M Russo, G Capranico - Nucleic acids research, 2020 - academic.oup.com
Genomic DNA and cellular RNAs can form a variety of non-B secondary structures, including
G-quadruplex (G4) and R-loops. G4s are constituted by stacked guanine tetrads held …

RNA/DNA hybrid interactome identifies DXH9 as a molecular player in transcriptional termination and R-loop-associated DNA damage

A Cristini, M Groh, MS Kristiansen, N Gromak - Cell reports, 2018 - cell.com
R-loops comprise an RNA/DNA hybrid and displaced single-stranded DNA. They play
important biological roles and are implicated in pathology. Even so, proteins recognizing …

Dual processing of R-loops and topoisomerase I induces transcription-dependent DNA double-strand breaks

A Cristini, G Ricci, S Britton, S Salimbeni, SN Huang… - Cell reports, 2019 - cell.com
Although accumulation of DNA damage and genomic instability in resting cells can cause
neurodegenerative disorders, our understanding of how transcription produces DNA double …

DNA Topoisomerase I differentially modulates R-loops across the human genome

SG Manzo, SR Hartono, LA Sanz, J Marinello… - Genome biology, 2018 - Springer
Background Co-transcriptional R-loops are abundant non-B DNA structures in mammalian
genomes. DNA Topoisomerase I (Top1) is often thought to regulate R-loop formation owing …

Transcriptional firing helps to drive NETosis

MA Khan, N Palaniyar - Scientific reports, 2017 - nature.com
Neutrophils are short-lived innate immune cells. These cells respond quickly to stimuli, and
die within minutes to hours; the relevance of DNA transcription in dying neutrophils remains …

TUG1-mediated R-loop resolution at microsatellite loci as a prerequisite for cancer cell proliferation

MM Suzuki, K Iijima, K Ogami, K Shinjo… - Nature …, 2023 - nature.com
Oncogene-induced DNA replication stress (RS) and consequent pathogenic R-loop
formation are known to impede S phase progression. Nonetheless, cancer cells …

The chromatin remodelling factor ATRX suppresses R‐loops in transcribed telomeric repeats

DTT Nguyen, HPJ Voon, B Xella, C Scott, D Clynes… - EMBO …, 2017 - embopress.org
ATRX is a chromatin remodelling factor found at a wide range of tandemly repeated
sequences including telomeres (TTAGGG) n. ATRX mutations are found in nearly all …

Type i DNA topoisomerases

G Capranico, J Marinello… - Journal of medicinal …, 2017 - ACS Publications
DNA topoisomerases constitute a large family of enzymes that are essential for all domains
of life. Although they share general reaction chemistry and the capacity to govern DNA …

Human mitochondrial degradosome prevents harmful mitochondrial R loops and mitochondrial genome instability

S Silva, LP Camino, A Aguilera - Proceedings of the …, 2018 - National Acad Sciences
R loops are nucleic acid structures comprising an DNA–RNA hybrid and a displaced single-
stranded DNA. These structures may occur transiently during transcription, playing essential …