Recent large-scale collaborations are generating major surveys of cell types and
connections in the mouse brain, collecting large amounts of data across modalities, spatial …

Classically, model‐based segmentation procedures match magnetic resonance imaging
(MRI) volumes to an expertly labeled atlas using nonlinear registration. The accuracy of …

Small animal magnetic resonance microscopy (MRM) has evolved significantly from testing
the boundaries of imaging physics to its expanding use today as a tool in noninvasive …

Detailed anatomical atlases can provide considerable interpretive power in studies of both
human and rodent neuroanatomy. Here we describe a three-dimensional atlas of the mouse …

One of the most common tasks in small rodents MRI pipelines is the voxel-wise
segmentation of the volume in multiple classes. While many segmentation schemes have …

Characterizing the performance of segmentation algorithms in brain images has been a
persistent challenge due to the complexity of neuroanatomical structures, the quality of …

The neocortex is the largest component of the mammalian cerebral cortex. It integrates
sensory inputs with experiences and memory to produce sophisticated responses to an …

In this study, a 3D digital atlas of the live mouse brain based on magnetic resonance
microscopy (MRM) is presented. C57BL/6J adult mouse brains were imaged in vivo on a 9.4 …

Magnetic resonance microscopy (MRM), when used in conjunction with active staining, can
produce high-resolution, high-contrast images of the mouse brain. Using MRM, we imaged …

Brain extraction is an important preprocessing step for further processing (eg, registration
and morphometric analysis) of brain MRI data. Due to the operator-dependent and time …