Data-driven modelling of signal-transduction networks

KA Janes, MB Yaffe - Nature reviews Molecular cell biology, 2006 - nature.com
New technologies are permitting large-scale quantitative studies of signal-transduction
networks. Such data are hard to understand completely by inspection and intuition.'Data …

Computational approaches for analyzing information flow in biological networks

B Kholodenko, MB Yaffe, W Kolch - Science signaling, 2012 - science.org
The advancements in “omics”(proteomics, genomics, lipidomics, and metabolomics)
technologies have yielded large inventories of genes, transcripts, proteins, and metabolites …

Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum

SC Bendall, EF Simonds, P Qiu, ED Amir, PO Krutzik… - Science, 2011 - science.org
Flow cytometry is an essential tool for dissecting the functional complexity of hematopoiesis.
We used single-cell “mass cytometry” to examine healthy human bone marrow, measuring …

An analysis of critical factors for quantitative immunoblotting

KA Janes - Science signaling, 2015 - science.org
Immunoblotting (also known as Western blotting) combined with digital image analysis can
be a reliable method for analyzing the abundance of proteins and protein modifications, but …

A systems model of signaling identifies a molecular basis set for cytokine-induced apoptosis

KA Janes, JG Albeck, S Gaudet, PK Sorger… - Science, 2005 - science.org
Signal transduction pathways control cellular responses to stimuli, but it is unclear how
molecular information is processed as a network. We constructed a systems model of 7980 …

A Mitotic Phosphorylation Feedback Network Connects Cdk1, Plk1, 53BP1, and Chk2 to Inactivate the G2/M DNA Damage Checkpoint

MATM van Vugt, AK Gardino, R Linding… - PLoS …, 2010 - journals.plos.org
DNA damage checkpoints arrest cell cycle progression to facilitate DNA repair. The ability to
survive genotoxic insults depends not only on the initiation of cell cycle checkpoints but also …

Drug target protein‐protein interaction networks: a systematic perspective

Y Feng, Q Wang, T Wang - BioMed research international, 2017 - Wiley Online Library
The identification and validation of drug targets are crucial in biomedical research and many
studies have been conducted on analyzing drug target features for getting a better …

A multiplexed homogeneous fluorescence-based assay for protein kinase activity in cell lysates

MD Shults, KA Janes, DA Lauffenburger, B Imperiali - Nature methods, 2005 - nature.com
New methods to quantify protein kinase activities directly from complex cellular mixtures are
critical for understanding biological regulatory pathways. Herein, a fluorescence-based …

The response of human epithelial cells to TNF involves an inducible autocrine cascade

KA Janes, S Gaudet, JG Albeck, UB Nielsen… - Cell, 2006 - cell.com
Tumor necrosis factor (TNF) is a proinflammatory cytokine that induces conflicting pro-and
antiapoptotic signals whose relative strengths determine the extent of cell death. TNF …

[HTML][HTML] Network medicine

T Pawson, R Linding - FEBS letters, 2008 - Elsevier
To more effectively target complex diseases like cancer, diabetes and schizophrenia, we
may need to rethink our strategies for drug development and the selection of molecular …