Data-driven modelling of signal-transduction networks
KA Janes, MB Yaffe - Nature reviews Molecular cell biology, 2006 - nature.com
New technologies are permitting large-scale quantitative studies of signal-transduction
networks. Such data are hard to understand completely by inspection and intuition.'Data …
networks. Such data are hard to understand completely by inspection and intuition.'Data …
Computational approaches for analyzing information flow in biological networks
B Kholodenko, MB Yaffe, W Kolch - Science signaling, 2012 - science.org
The advancements in “omics”(proteomics, genomics, lipidomics, and metabolomics)
technologies have yielded large inventories of genes, transcripts, proteins, and metabolites …
technologies have yielded large inventories of genes, transcripts, proteins, and metabolites …
Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum
Flow cytometry is an essential tool for dissecting the functional complexity of hematopoiesis.
We used single-cell “mass cytometry” to examine healthy human bone marrow, measuring …
We used single-cell “mass cytometry” to examine healthy human bone marrow, measuring …
An analysis of critical factors for quantitative immunoblotting
KA Janes - Science signaling, 2015 - science.org
Immunoblotting (also known as Western blotting) combined with digital image analysis can
be a reliable method for analyzing the abundance of proteins and protein modifications, but …
be a reliable method for analyzing the abundance of proteins and protein modifications, but …
A systems model of signaling identifies a molecular basis set for cytokine-induced apoptosis
Signal transduction pathways control cellular responses to stimuli, but it is unclear how
molecular information is processed as a network. We constructed a systems model of 7980 …
molecular information is processed as a network. We constructed a systems model of 7980 …
A Mitotic Phosphorylation Feedback Network Connects Cdk1, Plk1, 53BP1, and Chk2 to Inactivate the G2/M DNA Damage Checkpoint
MATM van Vugt, AK Gardino, R Linding… - PLoS …, 2010 - journals.plos.org
DNA damage checkpoints arrest cell cycle progression to facilitate DNA repair. The ability to
survive genotoxic insults depends not only on the initiation of cell cycle checkpoints but also …
survive genotoxic insults depends not only on the initiation of cell cycle checkpoints but also …
Drug target protein‐protein interaction networks: a systematic perspective
Y Feng, Q Wang, T Wang - BioMed research international, 2017 - Wiley Online Library
The identification and validation of drug targets are crucial in biomedical research and many
studies have been conducted on analyzing drug target features for getting a better …
studies have been conducted on analyzing drug target features for getting a better …
A multiplexed homogeneous fluorescence-based assay for protein kinase activity in cell lysates
MD Shults, KA Janes, DA Lauffenburger, B Imperiali - Nature methods, 2005 - nature.com
New methods to quantify protein kinase activities directly from complex cellular mixtures are
critical for understanding biological regulatory pathways. Herein, a fluorescence-based …
critical for understanding biological regulatory pathways. Herein, a fluorescence-based …
The response of human epithelial cells to TNF involves an inducible autocrine cascade
Tumor necrosis factor (TNF) is a proinflammatory cytokine that induces conflicting pro-and
antiapoptotic signals whose relative strengths determine the extent of cell death. TNF …
antiapoptotic signals whose relative strengths determine the extent of cell death. TNF …
[HTML][HTML] Network medicine
T Pawson, R Linding - FEBS letters, 2008 - Elsevier
To more effectively target complex diseases like cancer, diabetes and schizophrenia, we
may need to rethink our strategies for drug development and the selection of molecular …
may need to rethink our strategies for drug development and the selection of molecular …