A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses
A Hakimzadeh, A Abdala Asbun… - Molecular ecology …, 2024 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …
monitoring biodiversity in ecology. However, taxa identifications produced through …
New developments in the field of genomic technologies and their relevance to conservation management
Recent technological advances in the field of genomics offer conservation managers and
practitioners new tools to explore for conservation applications. Many of these tools are well …
practitioners new tools to explore for conservation applications. Many of these tools are well …
Invasion impacts and dynamics of a European‐wide introduced species
Globalization has led to the introduction of thousands of alien species worldwide. With
growing impacts by invasive species, understanding the invasion process remains critical for …
growing impacts by invasive species, understanding the invasion process remains critical for …
eDNA biomonitoring revealed the ecological effects of water diversion projects between Yangtze River and Tai Lake
L Zhang, J Yang, Y Zhang, J Shi, H Yu, X Zhang - Water research, 2022 - Elsevier
Water diversion has been widely used to address water shortages and security issues.
However, its long-term ecological impacts, particularly on the biodiversity and structure of …
However, its long-term ecological impacts, particularly on the biodiversity and structure of …
[HTML][HTML] Zooplankton biodiversity monitoring in polluted freshwater ecosystems: A technical review
W Xiong, X Huang, Y Chen, R Fu, X Du, X Chen… - Environmental Science …, 2020 - Elsevier
Freshwater ecosystems harbor a vast diversity of micro-eukaryotes (rotifers, crustaceans and
protists), and such diverse taxonomic groups play important roles in ecosystem functioning …
protists), and such diverse taxonomic groups play important roles in ecosystem functioning …
[HTML][HTML] Strategic considerations for invasive species managers in the utilization of environmental DNA (eDNA): steps for incorporating this powerful surveillance tool
J Morisette, S Burgiel, K Brantley… - … journal of applied …, 2021 - ncbi.nlm.nih.gov
Invasive species surveillance programs can utilize environmental DNA sampling and
analysis to provide information on the presence of invasive species. Wider utilization of …
analysis to provide information on the presence of invasive species. Wider utilization of …
Systematic review of marine environmental DNA metabarcoding studies: toward best practices for data usability and accessibility
MM Shea, J Kuppermann, MP Rogers, DS Smith… - PeerJ, 2023 - peerj.com
The emerging field of environmental DNA (eDNA) research lacks universal guidelines for
ensuring data produced are FAIR–findable, accessible, interoperable, and reusable–despite …
ensuring data produced are FAIR–findable, accessible, interoperable, and reusable–despite …
Assessment of stream macroinvertebrate communities with eDNA is not congruent with tissue‐based metabarcoding
Freshwater biomonitoring programmes routinely sample aquatic macroinvertebrates. These
samples are time‐consuming to collect, as well as challenging and costly to identify reliably …
samples are time‐consuming to collect, as well as challenging and costly to identify reliably …
Surveillance of emerging infectious diseases for biosecurity
R Hao, Y Liu, W Shen, R Zhao, B Jiang, H Song… - Science China Life …, 2022 - Springer
Emerging infectious diseases, such as COVID-19, continue to pose significant threats to
human beings and their surroundings. In addition, biological warfare, bioterrorism, biological …
human beings and their surroundings. In addition, biological warfare, bioterrorism, biological …
Water eDNA metabarcoding is effective in detecting non-native species in marinas, but detection errors still hinder its use for passive monitoring
Marinas are high-priority targets for marine non-indigenous species (NIS), where they
compose a large portion of the biofouling communities. The practicality of water samples …
compose a large portion of the biofouling communities. The practicality of water samples …