A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses

A Hakimzadeh, A Abdala Asbun… - Molecular ecology …, 2024 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …

New developments in the field of genomic technologies and their relevance to conservation management

G Segelbacher, M Bosse, P Burger, P Galbusera… - Conservation …, 2022 - Springer
Recent technological advances in the field of genomics offer conservation managers and
practitioners new tools to explore for conservation applications. Many of these tools are well …

Invasion impacts and dynamics of a European‐wide introduced species

PJ Haubrock, DA Ahmed, RN Cuthbert… - Global Change …, 2022 - Wiley Online Library
Globalization has led to the introduction of thousands of alien species worldwide. With
growing impacts by invasive species, understanding the invasion process remains critical for …

eDNA biomonitoring revealed the ecological effects of water diversion projects between Yangtze River and Tai Lake

L Zhang, J Yang, Y Zhang, J Shi, H Yu, X Zhang - Water research, 2022 - Elsevier
Water diversion has been widely used to address water shortages and security issues.
However, its long-term ecological impacts, particularly on the biodiversity and structure of …

[HTML][HTML] Zooplankton biodiversity monitoring in polluted freshwater ecosystems: A technical review

W Xiong, X Huang, Y Chen, R Fu, X Du, X Chen… - Environmental Science …, 2020 - Elsevier
Freshwater ecosystems harbor a vast diversity of micro-eukaryotes (rotifers, crustaceans and
protists), and such diverse taxonomic groups play important roles in ecosystem functioning …

[HTML][HTML] Strategic considerations for invasive species managers in the utilization of environmental DNA (eDNA): steps for incorporating this powerful surveillance tool

J Morisette, S Burgiel, K Brantley… - … journal of applied …, 2021 - ncbi.nlm.nih.gov
Invasive species surveillance programs can utilize environmental DNA sampling and
analysis to provide information on the presence of invasive species. Wider utilization of …

Systematic review of marine environmental DNA metabarcoding studies: toward best practices for data usability and accessibility

MM Shea, J Kuppermann, MP Rogers, DS Smith… - PeerJ, 2023 - peerj.com
The emerging field of environmental DNA (eDNA) research lacks universal guidelines for
ensuring data produced are FAIR–findable, accessible, interoperable, and reusable–despite …

Assessment of stream macroinvertebrate communities with eDNA is not congruent with tissue‐based metabarcoding

JE Gleason, V Elbrecht, TWA Braukmann… - Molecular …, 2021 - Wiley Online Library
Freshwater biomonitoring programmes routinely sample aquatic macroinvertebrates. These
samples are time‐consuming to collect, as well as challenging and costly to identify reliably …

Surveillance of emerging infectious diseases for biosecurity

R Hao, Y Liu, W Shen, R Zhao, B Jiang, H Song… - Science China Life …, 2022 - Springer
Emerging infectious diseases, such as COVID-19, continue to pose significant threats to
human beings and their surroundings. In addition, biological warfare, bioterrorism, biological …

Water eDNA metabarcoding is effective in detecting non-native species in marinas, but detection errors still hinder its use for passive monitoring

M Couton, L Lévêque, C Daguin-Thiébaut, T Comtet… - Biofouling, 2022 - Taylor & Francis
Marinas are high-priority targets for marine non-indigenous species (NIS), where they
compose a large portion of the biofouling communities. The practicality of water samples …