Targeting peptide‐mediated interactions in omics

J Lin, S Wang, L Wen, H Ye, S Shang, J Li, J Shu… - …, 2023 - Wiley Online Library
Peptide‐mediated interactions (PMIs) play a crucial role in cell signaling network, which are
responsible for about half of cellular protein–protein associations in the human interactome …

Molecular mimicry of host short linear motif-mediated interactions utilised by viruses for entry

S Goswami, D Samanta, K Duraivelan - Molecular Biology Reports, 2023 - Springer
Viruses are obligate intracellular parasites that depend on host cellular machinery for
performing even basic biological functions. One of the many ways they achieve this is …

Rapidly evolving viral motifs mostly target biophysically constrained binding pockets of host proteins

G Shuler, T Hagai - Cell Reports, 2022 - cell.com
Evolutionary changes in host-virus interactions can alter the course of infection, but the
biophysical and regulatory constraints that shape interface evolution remain largely …

Ehrlichia Wnt SLiM ligand mimic deactivates the Hippo pathway to engage the anti-apoptotic Yap-GLUT1-BCL-xL axis

CD Byerly, LNL Patterson, NA Pittner… - Infection and …, 2023 - Am Soc Microbiol
Ehrlichia chaffeensis TRP120 effector has evolved short linear motif (SLiM) ligand mimicry to
repurpose multiple evolutionarily conserved cellular signaling pathways, including Wnt …

Ehrlichia SLiM ligand mimetic activates Hedgehog signaling to engage a BCL-2 anti-apoptotic cellular program

CD Byerly, S Mitra, LNL Patterson, NA Pittner… - PLoS …, 2022 - journals.plos.org
Ehrlichia chaffeensis (E. chaffeensis) has evolved eukaryotic ligand mimicry to repurpose
multiple cellular signaling pathways for immune evasion. In this investigation, we …

Prediction of motif-mediated viral mimicry through the integration of host–pathogen interactions

S Idrees, KR Paudel, PM Hansbro - Archives of Microbiology, 2024 - Springer
One of the mechanisms viruses use in hijacking host cellular machinery is mimicking Short
Linear Motifs (SLiMs) in host proteins to maintain their life cycle inside host cells. In the face …

Evolution of SLiM-mediated hijack functions in intrinsically disordered viral proteins

J Glavina, N Palopoli, LB Chemes - Essays in Biochemistry, 2022 - portlandpress.com
Viruses and their hosts are involved in an 'arms race'where they continually evolve
mechanisms to overcome each other. It has long been proposed that intrinsic disorder …

TCellR2Vec: efficient feature selection for TCR sequences for cancer classification

Z Tayebi, S Ali, M Patterson - PeerJ Computer Science, 2024 - peerj.com
Cancer remains one of the leading causes of death globally. New immunotherapies that
harness the patient's immune system to fight cancer show promise, but their development …

Novel Insights into Phytoplasma Effectors

KG Carreón-Anguiano, SE Vila-Luna… - Horticulturae, 2023 - mdpi.com
Effectoromics has become integral to the identification of pathogen targets and/or host-
resistant proteins for the genetic improvement of plants in agriculture and horticulture …

[HTML][HTML] Ehrlichia Wnt short linear motif ligand mimetic deactivates the Hippo pathway to engage the anti-apoptotic Yap-GLUT1-BCL-xL axis

CD Byerly, LNL Patterson, NA Pittner, RN Solomon… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Ehrlichia chaffeensis TRP120 effector has evolved short linear motif (SLiM) ligand mimicry to
repurpose multiple evolutionarily conserved cellular signaling pathways including Wnt …