Cis-regulatory sequences in plants: their importance, discovery, and future challenges
The identification and characterization of cis-regulatory DNA sequences and how they
function to coordinate responses to developmental and environmental cues is of paramount …
function to coordinate responses to developmental and environmental cues is of paramount …
Evidence for and against liquid-liquid phase separation in the nucleus
SC Weber - Non-coding RNA, 2019 - mdpi.com
Enclosed by two membranes, the nucleus itself is comprised of various membraneless
compartments, including nuclear bodies and chromatin domains. These compartments play …
compartments, including nuclear bodies and chromatin domains. These compartments play …
The 3D architecture of the pepper genome and its relationship to function and evolution
The organization of chromatin into self-interacting domains is universal among eukaryotic
genomes, though how and why they form varies considerably. Here we report a …
genomes, though how and why they form varies considerably. Here we report a …
Phase separation in genome organization across evolution
Phase separation is emerging as a paradigm to explain the self-assembly and organization
of membraneless bodies in the cell. Recent advances show that this principle also extends …
of membraneless bodies in the cell. Recent advances show that this principle also extends …
Unraveling the 3D genome architecture in plants: present and future
The eukaryotic genome has a hierarchical three-dimensional (3D) organization with
functional implications for DNA replication, DNA repair, and transcriptional regulation. Over …
functional implications for DNA replication, DNA repair, and transcriptional regulation. Over …
3D organization of regulatory elements for transcriptional regulation in Arabidopsis
L Deng, Q Zhou, J Zhou, Q Zhang, Z Jia, G Zhu… - Genome Biology, 2023 - Springer
Background Although spatial organization of compartments and topologically associating
domains at large scale is relatively well studied, the spatial organization of regulatory …
domains at large scale is relatively well studied, the spatial organization of regulatory …
Understanding 3D genome organization and its effect on transcriptional gene regulation under environmental stress in plant: a chromatin perspective
The genome of a eukaryotic organism is comprised of a supra-molecular complex of
chromatin fibers and intricately folded three-dimensional (3D) structures. Chromosomal …
chromatin fibers and intricately folded three-dimensional (3D) structures. Chromosomal …
Marchantia TCP transcription factor activity correlates with three-dimensional chromatin structure
ES Karaaslan, N Wang, N Faiss, Y Liang… - Nature Plants, 2020 - nature.com
Abstract Information in the genome is not only encoded within sequence or epigenetic
modifications, but is also found in how it folds in three-dimensional space. The formation of …
modifications, but is also found in how it folds in three-dimensional space. The formation of …
SGF29 nuclear condensates reinforce cellular aging
K Yan, Q Ji, D Zhao, M Li, X Sun, Z Wang, X Liu, Z Liu… - Cell Discovery, 2023 - nature.com
Phase separation, a biophysical segregation of subcellular milieus referred as condensates,
is known to regulate transcription, but its impacts on physiological processes are less clear …
is known to regulate transcription, but its impacts on physiological processes are less clear …
β-actin dependent chromatin remodeling mediates compartment level changes in 3D genome architecture
Abstract β-actin is a crucial component of several chromatin remodeling complexes that
control chromatin structure and accessibility. The mammalian Brahma-associated factor …
control chromatin structure and accessibility. The mammalian Brahma-associated factor …