Next‐generation technologies and data analytical approaches for epigenomics

K Mensaert, S Denil, G Trooskens… - Environmental and …, 2014 - Wiley Online Library
Epigenetics refers to the collection of heritable features that modulate the genome–
environment interaction without being encoded in the actual DNA sequence. While being …

Genome-wide methylation profiling in decitabine-treated patients with acute myeloid leukemia

P Yan, D Frankhouser, M Murphy… - Blood, The Journal …, 2012 - ashpublications.org
The outcome of older (≥ 60 years) acute myeloid leukemia (AML) patients is poor, and
novel treatments are needed. In a phase 2 trial for older AML patients, low-dose (20 mg/m2 …

Identification of endometrial cancer methylation features using combined methylation analysis methods

MP Trimarchi, P Yan, J Groden, R Bundschuh… - PLoS …, 2017 - journals.plos.org
Background DNA methylation is a stable epigenetic mark that is frequently altered in tumors.
DNA methylation features are attractive biomarkers for disease states given the stability of …

Methods for high-throughput MethylCap-Seq data analysis

BAT Rodriguez, D Frankhouser, M Murphy, M Trimarchi… - BMC genomics, 2012 - Springer
Background Advances in whole genome profiling have revolutionized the cancer research
field, but at the same time have raised new bioinformatics challenges. For next generation …

Enrichment-based DNA methylation analysis using next-generation sequencing: sample exclusion, estimating changes in global methylation, and the contribution of …

MP Trimarchi, M Murphy, D Frankhouser… - BMC genomics, 2012 - Springer
Background DNA methylation is an important epigenetic mark and dysregulation of DNA
methylation is associated with many diseases including cancer. Advances in next …

Methyl-CpG/MBD2 interaction requires minimum separation and exhibits minimal sequence specificity

B Moreland, K Oman, J Curfman, P Yan… - Biophysical Journal, 2016 - cell.com
Determining the pattern of methylation at CpG dinucleotides in a cell remains an essential
component of epigenetic profiling. The correlations among methylation, gene expression …

[图书][B] Specific Gene Expression and Epigenetics: The Interplay Between the Genome and Its Environment

K Ayyanathan - 2014 - books.google.com
This new volume on gene expression and epigenetics discusses environmental effects
related to specific gene expression. The book also shows methods for bioinformatic analysis …

[图书][B] Genome-wide studies of DNA and RNA with modifications through high-throughput sequencing analysis

BS Moreland - 2018 - search.proquest.com
DNA/RNA-protein interactions are crucial to the maintenance, processing, and regulation of
the genetic information contained within a cell. Sets of particular DNA/RNA-protein …

[PDF][PDF] Epigenetic profiling in cancer

G Trooskens - 2017 - biblio.ugent.be
A decade ago, the Human Genome Project completed the ambitious effort to read the 3
billion DNA letters of genetic information found in most human cells. It provided the blueprint …

Exploring the Roles of Genetics and the Epigenetic Mechanism DNA Methylation in Honey Bee (Apis Mellifera) Behavior

CM Burden, JE Bobek - Handbook of Neurobehavioral …, 2017 - Wiley Online Library
The discovery of experience dependent DNA methylation modulation in the brain of adult
organisms revealed a layer of transcriptional control, beyond currently active signaling …