[HTML][HTML] Software tools and approaches for compound identification of LC-MS/MS data in metabolomics
The annotation of small molecules remains a major challenge in untargeted mass
spectrometry-based metabolomics. We here critically discuss structured elucidation …
spectrometry-based metabolomics. We here critically discuss structured elucidation …
Peptidomics
Peptides are biopolymers, typically consisting of 2–50 amino acids. They are biologically
produced by the cellular ribosomal machinery or by non-ribosomal enzymes and …
produced by the cellular ribosomal machinery or by non-ribosomal enzymes and …
SpaceM reveals metabolic states of single cells
A growing appreciation of the importance of cellular metabolism and revelations concerning
the extent of cell–cell heterogeneity demand metabolic characterization of individual cells …
the extent of cell–cell heterogeneity demand metabolic characterization of individual cells …
[HTML][HTML] Spatially resolved multi-omics deciphers bidirectional tumor-host interdependence in glioblastoma
Glioblastomas are malignant tumors of the central nervous system hallmarked by subclonal
diversity and dynamic adaptation amid developmental hierarchies. The source of dynamic …
diversity and dynamic adaptation amid developmental hierarchies. The source of dynamic …
[HTML][HTML] High-confidence structural annotation of metabolites absent from spectral libraries
MA Hoffmann, LF Nothias, M Ludwig… - Nature …, 2022 - nature.com
Untargeted metabolomics experiments rely on spectral libraries for structure annotation, but,
typically, only a small fraction of spectra can be matched. Previous in silico methods search …
typically, only a small fraction of spectra can be matched. Previous in silico methods search …
SODB facilitates comprehensive exploration of spatial omics data
Spatial omics technologies generate wealthy but highly complex datasets. Here we present
Spatial Omics DataBase (SODB), a web-based platform providing both rich data resources …
Spatial Omics DataBase (SODB), a web-based platform providing both rich data resources …
Transmission-mode MALDI-2 mass spectrometry imaging of cells and tissues at subcellular resolution
M Niehaus, J Soltwisch, ME Belov, K Dreisewerd - Nature methods, 2019 - nature.com
Matrix-assisted laser desorption–ionization mass spectrometry imaging in transmission-
mode geometry (t-MALDI–MSI) can provide molecular information with a pixel size of 1 µm …
mode geometry (t-MALDI–MSI) can provide molecular information with a pixel size of 1 µm …
[HTML][HTML] SCENITH: a flow cytometry-based method to functionally profile energy metabolism with single-cell resolution
RJ Argüello, AJ Combes, R Char, JP Gigan, AI Baaziz… - Cell metabolism, 2020 - cell.com
Energetic metabolism reprogramming is critical for cancer and immune responses. Current
methods to functionally profile the global metabolic capacities and dependencies of cells are …
methods to functionally profile the global metabolic capacities and dependencies of cells are …
[HTML][HTML] Advanced MALDI mass spectrometry imaging in pharmaceutical research and drug development
S Schulz, M Becker, MR Groseclose, S Schadt… - Current opinion in …, 2019 - Elsevier
Highlights•Ideal mass spectrometer for MALDI MSI would satisfy the '4S-criteria for
performance'(speed, specificity, spatial resolution and sensitivity).•Quantification MALDI MSI …
performance'(speed, specificity, spatial resolution and sensitivity).•Quantification MALDI MSI …
Spatially resolved metabolomics to discover tumor-associated metabolic alterations
Characterization of tumor metabolism with spatial information contributes to our
understanding of complex cancer metabolic reprogramming, facilitating the discovery of …
understanding of complex cancer metabolic reprogramming, facilitating the discovery of …