[HTML][HTML] Software tools and approaches for compound identification of LC-MS/MS data in metabolomics

I Blaženović, T Kind, J Ji, O Fiehn - Metabolites, 2018 - mdpi.com
The annotation of small molecules remains a major challenge in untargeted mass
spectrometry-based metabolomics. We here critically discuss structured elucidation …

Peptidomics

R Hellinger, A Sigurdsson, W Wu… - Nature Reviews …, 2023 - nature.com
Peptides are biopolymers, typically consisting of 2–50 amino acids. They are biologically
produced by the cellular ribosomal machinery or by non-ribosomal enzymes and …

SpaceM reveals metabolic states of single cells

L Rappez, M Stadler, S Triana, RM Gathungu… - Nature …, 2021 - nature.com
A growing appreciation of the importance of cellular metabolism and revelations concerning
the extent of cell–cell heterogeneity demand metabolic characterization of individual cells …

[HTML][HTML] Spatially resolved multi-omics deciphers bidirectional tumor-host interdependence in glioblastoma

VM Ravi, P Will, J Kueckelhaus, N Sun, K Joseph… - Cancer cell, 2022 - cell.com
Glioblastomas are malignant tumors of the central nervous system hallmarked by subclonal
diversity and dynamic adaptation amid developmental hierarchies. The source of dynamic …

[HTML][HTML] High-confidence structural annotation of metabolites absent from spectral libraries

MA Hoffmann, LF Nothias, M Ludwig… - Nature …, 2022 - nature.com
Untargeted metabolomics experiments rely on spectral libraries for structure annotation, but,
typically, only a small fraction of spectra can be matched. Previous in silico methods search …

SODB facilitates comprehensive exploration of spatial omics data

Z Yuan, W Pan, X Zhao, F Zhao, Z Xu, X Li, Y Zhao… - Nature …, 2023 - nature.com
Spatial omics technologies generate wealthy but highly complex datasets. Here we present
Spatial Omics DataBase (SODB), a web-based platform providing both rich data resources …

Transmission-mode MALDI-2 mass spectrometry imaging of cells and tissues at subcellular resolution

M Niehaus, J Soltwisch, ME Belov, K Dreisewerd - Nature methods, 2019 - nature.com
Matrix-assisted laser desorption–ionization mass spectrometry imaging in transmission-
mode geometry (t-MALDI–MSI) can provide molecular information with a pixel size of 1 µm …

[HTML][HTML] SCENITH: a flow cytometry-based method to functionally profile energy metabolism with single-cell resolution

RJ Argüello, AJ Combes, R Char, JP Gigan, AI Baaziz… - Cell metabolism, 2020 - cell.com
Energetic metabolism reprogramming is critical for cancer and immune responses. Current
methods to functionally profile the global metabolic capacities and dependencies of cells are …

[HTML][HTML] Advanced MALDI mass spectrometry imaging in pharmaceutical research and drug development

S Schulz, M Becker, MR Groseclose, S Schadt… - Current opinion in …, 2019 - Elsevier
Highlights•Ideal mass spectrometer for MALDI MSI would satisfy the '4S-criteria for
performance'(speed, specificity, spatial resolution and sensitivity).•Quantification MALDI MSI …

Spatially resolved metabolomics to discover tumor-associated metabolic alterations

C Sun, T Li, X Song, L Huang, Q Zang… - Proceedings of the …, 2019 - National Acad Sciences
Characterization of tumor metabolism with spatial information contributes to our
understanding of complex cancer metabolic reprogramming, facilitating the discovery of …