How do small single-domain proteins fold?
SE Jackson - Folding and Design, 1998 - cell.com
Many small, monomeric proteins fold with simple two-state kinetics and show wide variation
in folding rates, from microseconds to seconds. Thus, stable intermediates are not a …
in folding rates, from microseconds to seconds. Thus, stable intermediates are not a …
Fold change in evolution of protein structures
NV Grishin - Journal of structural biology, 2001 - Elsevier
Typically, protein spatial structures are more conserved in evolution than amino acid
sequences. However, the recent explosion of sequence and structure information …
sequences. However, the recent explosion of sequence and structure information …
Protein structure and folding pathway prediction based on remote homologs recognition using PAthreader
Recognition of remote homologous structures is a necessary module in AlphaFold2 and is
also essential for the exploration of protein folding pathways. Here, we propose a method …
also essential for the exploration of protein folding pathways. Here, we propose a method …
Contact order, transition state placement and the refolding rates of single domain proteins
Theoretical studies have suggested relationships between the size, stability and topology of
a protein fold and the rate and mechanisms by which it is achieved. The recent …
a protein fold and the rate and mechanisms by which it is achieved. The recent …
Heterogeneity in protein folding and unfolding reactions
S Bhatia, JB Udgaonkar - Chemical Reviews, 2022 - ACS Publications
Proteins have dynamic structures that undergo chain motions on time scales spanning from
picoseconds to seconds. Resolving the resultant conformational heterogeneity is essential …
picoseconds to seconds. Resolving the resultant conformational heterogeneity is essential …
De novo design and structural characterization of proteins and metalloproteins
▪ Abstract De novo protein design has recently emerged as an attractive approach for
studying the structure and function of proteins. This approach critically tests our …
studying the structure and function of proteins. This approach critically tests our …
Bacterial 1, 3-1, 4-β-glucanases: structure, function and protein engineering
A Planas - Biochimica et Biophysica Acta (BBA)-Protein Structure …, 2000 - Elsevier
1, 3-1, 4-β-Glucanases (or lichenases, EC 3.2. 1.73) hydrolyse linear β-glucans containing β-
1, 3 and β-1, 4 linkages such as cereal β-glucans and lichenan, with a strict cleavage …
1, 3 and β-1, 4 linkages such as cereal β-glucans and lichenan, with a strict cleavage …
Theoretical studies of protein-folding thermodynamics and kinetics
EI Shakhnovich - Current opinion in structural biology, 1997 - Elsevier
Recently, protein-folding models have advanced to the point where folding simulations of
protein-like chains of reasonable length (up to 125 amino acids) are feasible, and the major …
protein-like chains of reasonable length (up to 125 amino acids) are feasible, and the major …
Experiment and theory highlight role of native state topology in SH3 folding
DS Riddle, VP Grantcharova, JV Santiago… - nature structural …, 1999 - nature.com
We use a combination of experiments, computer simulations and simple model calculations
to characterize, first, the folding transition state ensemble of the src SH3 domain, and …
to characterize, first, the folding transition state ensemble of the src SH3 domain, and …
Cotranslational protein folding
AN Fedorov, TO Baldwin - Journal of Biological Chemistry, 1997 - ASBMB
The problem of how the linear amino acid sequence of a polypeptide folds to assume its
unique tertiary structure is one of the most basic and challenging conundrums of …
unique tertiary structure is one of the most basic and challenging conundrums of …