GenStore: A high-performance in-storage processing system for genome sequence analysis

N Mansouri Ghiasi, J Park, H Mustafa, J Kim… - Proceedings of the 27th …, 2022 - dl.acm.org
Read mapping is a fundamental step in many genomics applications. It is used to identify
potential matches and differences between fragments (called reads) of a sequenced …

Gate-controlled skyrmion and domain wall chirality

CE Fillion, J Fischer, R Kumar, A Fassatoui… - Nature …, 2022 - nature.com
Magnetic skyrmions are localized chiral spin textures, which offer great promise to store and
process information at the nanoscale. In the presence of asymmetric exchange interactions …

AlignS: A processing-in-memory accelerator for DNA short read alignment leveraging SOT-MRAM

S Angizi, J Sun, W Zhang, D Fan - … of the 56th Annual Design Automation …, 2019 - dl.acm.org
Classified as a complex big data analytics problem, DNA short read alignment serves as a
major sequential bottleneck to massive amounts of data generated by next-generation …

SuperNPU: An extremely fast neural processing unit using superconducting logic devices

K Ishida, I Byun, I Nagaoka, K Fukumitsu… - 2020 53rd Annual …, 2020 - ieeexplore.ieee.org
Superconductor single-flux-quantum (SFQ) logic family has been recognized as a highly
promising solution for the post-Moore's era, thanks to its ultra-fast and low-power switching …

Gencache: Leveraging in-cache operators for efficient sequence alignment

A Nag, CN Ramachandra, R Balasubramonian… - Proceedings of the …, 2019 - dl.acm.org
Precision Medicine will rely on frequent genomic analysis, especially for patients
undergoing cancer treatments or suffering from rare diseases. Sequence alignment is …

GenStore: A High-Performance and Energy-Efficient In-Storage Computing System for Genome Sequence Analysis

NM Ghiasi, J Park, H Mustafa, J Kim, A Olgun… - arXiv preprint arXiv …, 2022 - arxiv.org
Read mapping is a fundamental, yet computationally-expensive step in many genomics
applications. It is used to identify potential matches and differences between fragments …

RAPID: A ReRAM processing in-memory architecture for DNA sequence alignment

S Gupta, M Imani, B Khaleghi, V Kumar… - 2019 IEEE/ACM …, 2019 - ieeexplore.ieee.org
Sequence alignment is a core component of many biological applications. As the
advancement in sequencing technologies produces a tremendous amount of data on an …

Automated accelerator generation and optimization with composable, parallel and pipeline architecture

J Cong, P Wei, CH Yu, P Zhang - Proceedings of the 55th Annual Design …, 2018 - dl.acm.org
CPU-FPGA heterogeneous architectures feature flexible acceleration of many workloads to
advance computational capabilities and energy efficiency in today's datacenters. This …

Positional stability of skyrmions in a racetrack memory with notched geometry

MG Morshed, H Vakili, AW Ghosh - Physical Review Applied, 2022 - APS
Magnetic skyrmions are chiral spin textures with attractive features, such as ultrasmall size,
solitonic nature, and easy mobility with small electrical currents that make them promising as …

UGEMM: Unary computing architecture for GEMM applications

D Wu, J Li, R Yin, H Hsiao, Y Kim… - 2020 ACM/IEEE 47th …, 2020 - ieeexplore.ieee.org
General matrix multiplication (GEMM) is universal in various applications, such as signal
processing, machine learning, and computer vision. Conventional GEMM hardware …