Intragenomic rDNA variation-the product of concerted evolution, mutation, or something in between?
The classical model of concerted evolution states that hundreds to thousands of ribosomal
DNA (rDNA) units undergo homogenization, making the multiple copies of the individual …
DNA (rDNA) units undergo homogenization, making the multiple copies of the individual …
Ribosome biogenesis in plants: from functional 45S ribosomal DNA organization to ribosome assembly factors
J Sáez-Vásquez, M Delseny - The Plant Cell, 2019 - academic.oup.com
Abstract The transcription of 18S, 5.8 S, and 18S rRNA genes (45S rDNA), cotranscriptional
processing of pre-rRNA, and assembly of mature rRNA with ribosomal proteins are the …
processing of pre-rRNA, and assembly of mature rRNA with ribosomal proteins are the …
Polyploidy, the nucleotype, and novelty: the impact of genome doubling on the biology of the cell
Polyploidy is a key mechanism of genome evolution and speciation, particularly in plants.
Many aspects of polyploidy have been elucidated with the tools that have become available …
Many aspects of polyploidy have been elucidated with the tools that have become available …
findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies
Motivation Analyzing k-mer frequencies in whole-genome sequencing data is becoming a
common method for estimating genome size (GS). However, it remains uninvestigated how …
common method for estimating genome size (GS). However, it remains uninvestigated how …
Gradual evolution of allopolyploidy in Arabidopsis suecica
R Burns, T Mandáková, J Gunis… - Nature Ecology & …, 2021 - nature.com
Most diploid organisms have polyploid ancestors. The evolutionary process of
polyploidization is poorly understood but has frequently been conjectured to involve some …
polyploidization is poorly understood but has frequently been conjectured to involve some …
The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history
DL Filiault, ES Ballerini, T Mandáková, G Aköz… - elife, 2018 - elifesciences.org
The columbine genus Aquilegia is a classic example of an adaptive radiation, involving a
wide variety of pollinators and habitats. Here we present the genome assembly of A …
wide variety of pollinators and habitats. Here we present the genome assembly of A …
[HTML][HTML] Loss of m1acp3Ψ ribosomal RNA modification is a major feature of cancer
The ribosome is an RNA-protein complex that is essential for translation in all domains of
life. The structural and catalytic core of the ribosome is its ribosomal RNA (rRNA). While …
life. The structural and catalytic core of the ribosome is its ribosomal RNA (rRNA). While …
Mechanisms of rDNA copy number maintenance
JO Nelson, GJ Watase, N Warsinger-Pepe… - Trends in Genetics, 2019 - cell.com
rDNA, the genes encoding the RNA components of ribosomes (rRNA), are highly repetitive
in all eukaryotic genomes, containing 100s to 1000s of copies, to meet the demand for …
in all eukaryotic genomes, containing 100s to 1000s of copies, to meet the demand for …
MSH 2 shapes the meiotic crossover landscape in relation to interhomolog polymorphism in Arabidopsis
AR Blackwell, J Dluzewska… - The EMBO …, 2020 - embopress.org
During meiosis, DNA double‐strand breaks undergo interhomolog repair to yield crossovers
between homologous chromosomes. To investigate how interhomolog sequence …
between homologous chromosomes. To investigate how interhomolog sequence …
Pushing the limits of HiFi assemblies reveals centromere diversity between two Arabidopsis thaliana genomes
FA Rabanal, M Gräff, C Lanz, K Fritschi… - Nucleic Acids …, 2022 - academic.oup.com
Although long-read sequencing can often enable chromosome-level reconstruction of
genomes, it is still unclear how one can routinely obtain gapless assemblies. In the model …
genomes, it is still unclear how one can routinely obtain gapless assemblies. In the model …