Plant B vitamin pathways and their compartmentation: a guide for the perplexed

S Gerdes, C Lerma-Ortiz, O Frelin… - Journal of …, 2012 - academic.oup.com
The B vitamins and the cofactors derived from them are essential for life. B vitamin synthesis
in plants is consequently as crucial to plants themselves as it is to humans and animals …

Expressed genes and their new alleles identification during fibre elongation reveal the genetic factors underlying improvements of fibre length in cotton

J Ma, Y Jiang, W Pei, M Wu, Q Ma, J Liu… - Plant Biotechnology …, 2022 - Wiley Online Library
Interspecific breeding in cotton takes advantage of genetic recombination among desirable
genes from different parental lines. However, the expression new alleles (ENAs) from …

MosaicFinder: identification of fused gene families in sequence similarity networks

PA Jachiet, R Pogorelcnik, A Berry, P Lopez… - …, 2013 - academic.oup.com
Motivation: Gene fusion is an important evolutionary process. It can yield valuable
information to infer the interactions and functions of proteins. Fused genes have been …

CompositeSearch: a generalized network approach for composite gene families detection

JS Pathmanathan, P Lopez, FJ Lapointe… - … biology and evolution, 2018 - academic.oup.com
Genes evolve by point mutations, but also by shuffling, fusion, and fission of genetic
fragments. Therefore, similarity between two sequences can be due to common ancestry …

Systematic identification and analysis of frequent gene fusion events in metabolic pathways

CS Henry, C Lerma-Ortiz, SY Gerdes, JD Mullen… - BMC genomics, 2016 - Springer
Background Gene fusions are the most powerful type of in silico-derived functional
associations. However, many fusion compilations were made when< 100 genomes were …

The bifunctional protein TtFARAT from Tetrahymena thermophila catalyzes the formation of both precursors required to initiate ether lipid biosynthesis

F Dittrich-Domergue, J Joubès, P Moreau… - Journal of Biological …, 2014 - ASBMB
The biosynthesis of ether lipids and wax esters requires as precursors fatty alcohols, which
are synthesized by fatty acyl reductases (FARs). The presence of ether glycerolipids as well …

The Schizosaccharomyces pombe fusion gene hal3 encodes three distinct activities

C Molero, K Petrenyi, A Gonzalez… - Molecular …, 2013 - Wiley Online Library
S accharomyces cerevisiae H al3 and V hs3 are moonlighting proteins, forming an atypical
heterotrimeric decarboxylase (PPCDC) required for CoA biosynthesis, and regulating cation …

Genome fusion detection: a novel method to detect fusion genes from SNP-array data

S Thieme, P Groth - Bioinformatics, 2013 - academic.oup.com
Motivation: Fusion genes result from genomic rearrangements, such as deletions,
amplifications and translocations. Such rearrangements can also frequently be observed in …

MtnBD Is a Multifunctional Fusion Enzyme in the Methionine Salvage Pathway of Tetrahymena thermophila

T Nakano, I Ohki, A Yokota, H Ashida - PLoS One, 2013 - journals.plos.org
To recycle reduced sulfur to methionine in the methionine salvage pathway (MSP), 5-
methylthioribulose-1-phosphate is converted to 2-keto-4-methylthiobutyrate, the methionine …

Evolutionary Analysis of the Protein Domain Distribution in Eukaryotes

AA Parikesit - 2012 - ul.qucosa.de
Abstract (EN) Investigations into the origin and evolution of regulatory mechanisms require
quantitative estimates of the abundance and co-occurrence of functional protein domains …