Exponential scaling of single-cell RNA-seq in the past decade

V Svensson, R Vento-Tormo, SA Teichmann - Nature protocols, 2018 - nature.com
Measurement of the transcriptomes of single cells has been feasible for only a few years, but
it has become an extremely popular assay. While many types of analysis can be carried out …

Bayesian approach to single-cell differential expression analysis

PV Kharchenko, L Silberstein, DT Scadden - Nature methods, 2014 - nature.com
Single-cell data provide a means to dissect the composition of complex tissues and
specialized cellular environments. However, the analysis of such measurements is …

From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing

GK Marinov, BA Williams, K McCue… - Genome …, 2014 - genome.cshlp.org
Single-cell RNA-seq mammalian transcriptome studies are at an early stage in uncovering
cell-to-cell variation in gene expression, transcript processing and editing, and regulatory …

Nucleic acid sequence analysis from single cells

N Salathia, JB Fan, F Kaper, GM Cann… - US Patent …, 2021 - Google Patents
Gertz, Jason et al.,“Transposease mediated construction of RNA seq libraries”, Genome
Research, 22 (1), 2012, 134-141. Isalm, et al.,“Quantitative single-cell RNA-seq with unique …

RNA sequencing by direct tagmentation of RNA/DNA hybrids

L Di, Y Fu, Y Sun, J Li, L Liu, J Yao… - Proceedings of the …, 2020 - National Acad Sciences
Transcriptome profiling by RNA sequencing (RNA-seq) has been widely used to
characterize cellular status, but it relies on second-strand complementary DNA (cDNA) …

Current and emerging technologies for the analysis of the genome-wide and locus-specific DNA methylation patterns

J Tost - DNA Methyltransferases-Role and Function, 2016 - Springer
DNA methylation is the most studied epigenetic modification, and altered DNA methylation
patterns have been identified in cancer and more recently also in many other complex …

Splicing heterogeneity: separating signal from noise

Y Wan, DR Larson - Genome biology, 2018 - Springer
Single-cell analyses have revealed a tremendous variety among cells in the abundance and
chemical composition of RNA. Much of this heterogeneity is due to alternative splicing by the …

Transgenerational inheritance of non-genetically determined phenotypes

ML Holland, VK Rakyan - Biochemical Society Transactions, 2013 - portlandpress.com
Inheritance of non-genetic factors permits ancestral environmental history to inform the
development of subsequent generations. This form of soft inheritance has been shown in …

Cholinergic neuron gene expression differences captured by translational profiling in a mouse model of Alzheimer's disease

PM McKeever, TH Kim, AR Hesketh, L MacNair… - Neurobiology of …, 2017 - Elsevier
Cholinergic neurotransmission is impaired in Alzheimer's disease (AD), and loss of basal
forebrain cholinergic neurons is a key component of disease pathogenicity and …

Single-cell expression profiling reveals a dynamic state of cardiac precursor cells in the early mouse embryo

I Kokkinopoulos, H Ishida, R Saba, P Ruchaya… - PLoS …, 2015 - journals.plos.org
In the early vertebrate embryo, cardiac progenitor/precursor cells (CPs) give rise to cardiac
structures. Better understanding their biological character is critical to understand the heart …