Transcriptional Regulation and Implications for Controlling Hox Gene Expression

Z Afzal, R Krumlauf - Journal of Developmental Biology, 2022 - mdpi.com
Hox genes play key roles in axial patterning and regulating the regional identity of cells and
tissues in a wide variety of animals from invertebrates to vertebrates. Nested domains of Hox …

[HTML][HTML] HOTTIP-dependent R-loop formation regulates CTCF boundary activity and TAD integrity in leukemia

H Luo, G Zhu, MA Eshelman, TK Fung, Q Lai, F Wang… - Molecular cell, 2022 - cell.com
HOTTIP lncRNA is highly expressed in acute myeloid leukemia (AML) driven by MLL
rearrangements or NPM1 mutations to mediate HOXA topologically associated domain …

Determinants and role of chromatin organization in acute leukemia

C Fang, S Rao, JD Crispino, P Ntziachristos - Leukemia, 2020 - nature.com
DNA is compacted into higher order structures that have major implications in gene
regulation. These structures allow for long-range interactions of DNA elements, such as the …

Regulation of 3D organization and its role in cancer biology

A Peng, W Peng, R Wang, H Zhao, X Yu… - Frontiers in Cell and …, 2022 - frontiersin.org
Three-dimensional (3D) genomics is the frontier field in the post-genomics era, its foremost
content is the relationship between chromatin spatial conformation and regulation of gene …

Effect of all-but-one conditional analysis for eQTL isolation in peripheral blood

M Brown, E Greenwood, B Zeng, JE Powell… - Genetics, 2023 - academic.oup.com
Expression quantitative trait locus detection has become increasingly important for
understanding how noncoding variants contribute to disease susceptibility and complex …

CTCF-mediated genome organization and leukemogenesis

Y Qiu, S Huang - Leukemia, 2020 - nature.com
Recent technological advancements and genome-wide studies provide compelling
evidence that dynamic chromatin interaction and three-dimensional genome organization in …

Deciphering the complexity of 3D chromatin organization driving lymphopoiesis and lymphoid malignancies

L Scourzic, E Salataj, E Apostolou - Frontiers in Immunology, 2021 - frontiersin.org
Proper lymphopoiesis and immune responses depend on the spatiotemporal control of
multiple processes, including gene expression, DNA recombination and cell fate decisions …

LncRNA Hmrhl regulates expression of cancer related genes in chronic myelogenous leukemia through chromatin association

SR Choudhury, S Dutta, U Bhaduri, MRS Rao - NAR cancer, 2021 - academic.oup.com
Long non-coding RNA has emerged as a key regulator of myriad gene functions. One such
lncRNA mrhl, reported by our group, was found to have important role in spermatogenesis …

Signaling pathways and regulation of gene expression in hematopoietic cells

D Bogush, J Schramm, Y Ding, B He, C Singh… - Advances in Biological …, 2023 - Elsevier
Cellular functions are regulated by signal transduction pathway networks consisting of
protein-modifying enzymes that control the activity of many downstream proteins. Protein …

CTCF-binding element regulates ESC differentiation via orchestrating long-range chromatin interaction between enhancers and HoxA

G Su, W Wang, J Chen, M Liu, J Zheng, D Guo… - Journal of Biological …, 2021 - ASBMB
Proper expression of Homeobox A cluster genes (HoxA) is essential for embryonic stem cell
(ESC) differentiation and individual development. However, mechanisms controlling precise …