Computational models for active matter

MR Shaebani, A Wysocki, RG Winkler… - Nature Reviews …, 2020 - nature.com
Active matter, which ranges from molecular motors to groups of animals, exists at different
length scales and timescales, and various computational models have been proposed to …

Soft matter models of developing tissues and tumors

D Gonzalez-Rodriguez, K Guevorkian, S Douezan… - Science, 2012 - science.org
Analogies with inert soft condensed matter—such as viscoelastic liquids, pastes, foams,
emulsions, colloids, and polymers—can be used to investigate the mechanical response of …

Simulating tissue mechanics with agent-based models: concepts, perspectives and some novel results

P Van Liedekerke, MM Palm, N Jagiella… - Computational particle …, 2015 - Springer
In this paper we present an overview of agent-based models that are used to simulate
mechanical and physiological phenomena in cells and tissues, and we discuss underlying …

Nonlinear modelling of cancer: bridging the gap between cells and tumours

JS Lowengrub, HB Frieboes, F Jin, YL Chuang, X Li… - …, 2009 - iopscience.iop.org
Despite major scientific, medical and technological advances over the last few decades, a
cure for cancer remains elusive. The disease initiation is complex, and including initiation …

Rigidity transitions in development and disease

E Hannezo, CP Heisenberg - Trends in Cell Biology, 2022 - cell.com
Although rigidity and jamming transitions have been widely studied in physics and material
science, their importance in a number of biological processes, including embryo …

A review of mathematical models for the formation of vascular networks

M Scianna, CG Bell, L Preziosi - Journal of theoretical biology, 2013 - Elsevier
Two major mechanisms are involved in the formation of blood vasculature: vasculogenesis
and angiogenesis. The former term describes the formation of a capillary-like network from …

Phase-field modeling of fatigue coupled to cyclic plasticity in an energetic formulation

J Ulloa, J Wambacq, R Alessi, G Degrande… - Computer Methods in …, 2021 - Elsevier
This paper presents a modeling framework to describe the driving mechanisms of cyclic
failure in brittle and ductile materials, including cyclic plasticity and fatigue crack growth. A …

Building a tissue: mesenchymal and epithelial cell spheroids mechanical properties at micro-and nanoscale

NV Kosheleva, YM Efremov, PI Koteneva, IV Ilina… - Acta Biomaterialia, 2023 - Elsevier
Cell transitions between the epithelial and mesenchymal phenotypes provide the regulated
morphogenesis and regeneration throughout the ontogenesis. The tissue mechanics and …

Viscoelastic properties in cancer: From cells to spheroids

Y Abidine, A Giannetti, J Revilloud, VM Laurent… - Cells, 2021 - mdpi.com
AFM-based rheology methods enable the investigation of the viscoelastic properties of
cancer cells. Such properties are known to be essential for cell functions, especially for …

Effective governing equations for poroelastic growing media

R Penta, D Ambrosi, RJ Shipley - Quarterly Journal of …, 2014 - ieeexplore.ieee.org
A new mathematical model is developed for the macroscopic behaviour of a porous, linear
elastic solid, saturated with a slowly flowing incompressible, viscous fluid, with surface …