Motivation: The assessment of protein structure prediction techniques requires objective
criteria to measure the similarity between a computational model and the experimentally …

We describe predictions made using the Rosetta structure prediction methodology for the
Eighth Critical Assessment of Techniques for Protein Structure Prediction. Aggressive …

The bioinformatics analysis of proteins containing tandem repeats requires special computer
programs and databases, since the conventional approaches predominantly developed for …

Until now it has been impractical to observe protein folding in silico for proteins larger than
50 residues. Limitations of both force field accuracy and computational efficiency make the …

Abstract In the Ninth Edition of the Critical Assessment of Techniques for Protein Structure
Prediction (CASP9), 61,665 models submitted by 176 groups were assessed for their …

Abstract Evaluation of protein models against the native structure is essential for the
development and benchmarking of protein structure prediction methods. Although a number …

We present an assessment of 'template‐free modeling'(FM) in CASP11and ROLL.
Community‐wide server performance suggested the use of automated scores similar to …

We present an overview of the ninth round of Critical Assessment of Protein Structure
Prediction (CASP9)“Template free modeling” category (FM). Prediction models were …

The biennial CASP experiment is a crucial way to evaluate, in an unbiased way, the
progress in predicting novel 3D protein structures. In this article, we assess the quality of …

Ambiguity is the quality of being open to several interpretations. For an image, it arises when
the contained elements can be delimited in two or more distinct ways, which may cause …