C-to-U and U-to-C: RNA editing in plant organelles and beyond

V Knoop - Journal of Experimental Botany, 2023 - academic.oup.com
The genomes in the two energy-converting organelles of plant cells, chloroplasts and
mitochondria, contain numerous 'errors' that are corrected at the level of RNA transcript …

GUN control in retrograde signaling: how GENOMES UNCOUPLED proteins adjust nuclear gene expression to plastid biogenesis

GZ Wu, R Bock - The Plant Cell, 2021 - academic.oup.com
Communication between cellular compartments is vital for development and environmental
adaptation. Signals emanating from organelles, so-called retrograde signals, coordinate …

Chloroplast translational regulation uncovers nonessential photosynthesis genes as key players in plant cold acclimation

Y Gao, W Thiele, O Saleh, F Scossa, F Arabi… - The Plant …, 2022 - academic.oup.com
Plants evolved efficient multifaceted acclimation strategies to cope with low temperatures.
Chloroplasts respond to temperature stimuli and participate in temperature sensing and …

[HTML][HTML] Nuclearly encoded splicing factors implicated in RNA splicing in higher plant organelles

AF De Longevialle, ID Small, C Lurin - Molecular Plant, 2010 - cell.com
Plant organelles arose from two independent endosymbiosis events. Throughout
evolutionary history, tight control of chloroplasts and mitochondria has been gained by the …

A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii

F Grewe, S Herres, P Viehöver… - Nucleic Acids …, 2011 - academic.oup.com
The analysis of the mitochondrial DNA of Isoetes engelmannii as a first representative of the
lycophytes recently revealed very small introns and indications for extremely frequent RNA …

white panicle2 encoding thioredoxin z, regulates plastid RNA editing by interacting with multiple organellar RNA editing factors in rice

Y Wang, Y Wang, Y Ren, E Duan, X Zhu… - New …, 2021 - Wiley Online Library
Thioredoxins (TRXs) occur in plant chloroplasts as complex disulphide oxidoreductases.
Although many biological processes are regulated by thioredoxins, the regulatory …

[HTML][HTML] Dynamic response of RNA editing to temperature in Drosophila

LE Rieder, YA Savva, MA Reyna, YJ Chang, JS Dorsky… - BMC biology, 2015 - Springer
Background Adenosine-to-inosine RNA editing is a highly conserved process that post-
transcriptionally modifies mRNA, generating proteomic diversity, particularly within the …

Structural features and transcript-editing analysis of sugarcane (Saccharum officinarum L.) chloroplast genome

T Calsa Júnior, DM Carraro, MR Benatti, AC Barbosa… - Current Genetics, 2004 - Springer
The complete nucleotide sequence of the chloroplast genome of sugarcane (Saccharum
officinarum) was determined. It consists of 141,182 base-pairs (bp), containing a pair of …

ChloroSeq, an optimized chloroplast RNA-Seq bioinformatic pipeline, reveals remodeling of the organellar transcriptome under heat stress

B Castandet, AM Hotto, SR Strickler… - G3: Genes, Genomes …, 2016 - academic.oup.com
Although RNA-Seq has revolutionized transcript analysis, organellar transcriptomes are
rarely assessed even when present in published datasets. Here, we describe the …

[HTML][HTML] Complex chloroplast RNA metabolism: just debugging the genetic programme?

UG Maier, A Bozarth, HT Funk, S Zauner, SA Rensing… - BMC biology, 2008 - Springer
Background The gene expression system of chloroplasts is far more complex than that of
their cyanobacterial progenitor. This gain in complexity affects in particular RNA metabolism …