Nucleases: diversity of structure, function and mechanism
W Yang - Quarterly reviews of biophysics, 2011 - cambridge.org
Nucleases cleave the phosphodiester bonds of nucleic acids and may be endo or exo,
DNase or RNase, topoisomerases, recombinases, ribozymes, or RNA splicing enzymes. In …
DNase or RNase, topoisomerases, recombinases, ribozymes, or RNA splicing enzymes. In …
Structure and function of type II restriction endonucleases
A Pingoud, A Jeltsch - Nucleic acids research, 2001 - academic.oup.com
More than 3000 type II restriction endonucleases have been discovered. They recognize
short, usually palindromic, sequences of 4–8 bp and, in the presence of Mg2+, cleave the …
short, usually palindromic, sequences of 4–8 bp and, in the presence of Mg2+, cleave the …
DNA-bound structures and mutants reveal abasic DNA binding by APE1 DNA repair and coordination
CD Mol, T Izumi, S Mitra, JA Tainer - Nature, 2000 - nature.com
Non-coding apurinic/apyrimidinic (AP) sites in DNA are continually created in cells both
spontaneously and by damage-specific DNA glycosylases. The biologically critical human …
spontaneously and by damage-specific DNA glycosylases. The biologically critical human …
Behavior of restriction–modification systems as selfish mobile elements and their impact on genome evolution
I Kobayashi - Nucleic acids research, 2001 - academic.oup.com
Restriction–modification (RM) systems are composed of genes that encode a restriction
enzyme and a modification methylase. RM systems sometimes behave as discrete units of …
enzyme and a modification methylase. RM systems sometimes behave as discrete units of …
The crystal structure of DNA mismatch repair protein MutS binding to a G· T mismatch
MH Lamers, A Perrakis, JH Enzlin, HHK Winterwerp… - Nature, 2000 - nature.com
DNA mismatch repair ensures genomic integrity on DNA replication. Recognition of a DNA
mismatch by a dimeric MutS protein initiates a cascade of reactions and results in repair of …
mismatch by a dimeric MutS protein initiates a cascade of reactions and results in repair of …
DNA mismatch repair in eukaryotes and bacteria
K Fukui - Journal of nucleic acids, 2010 - Wiley Online Library
DNA mismatch repair (MMR) corrects mismatched base pairs mainly caused by DNA
replication errors. The fundamental mechanisms and proteins involved in the early reactions …
replication errors. The fundamental mechanisms and proteins involved in the early reactions …
A structurally-validated multiple sequence alignment of 497 human protein kinase domains
V Modi, RL Dunbrack Jr - Scientific reports, 2019 - nature.com
Studies on the structures and functions of individual kinases have been used to understand
the biological properties of other kinases that do not yet have experimental structures. The …
the biological properties of other kinases that do not yet have experimental structures. The …
Abasic site recognition by two apurinic/apyrimidinic endonuclease families in DNA base excision repair: the 3′ ends justify the means
CD Mol, DJ Hosfield, JA Tainer - Mutation Research/DNA Repair, 2000 - Elsevier
DNA damage occurs unceasingly in all cells. Spontaneous DNA base loss, as well as the
removal of damaged DNA bases by specific enzymes targeted to distinct base lesions …
removal of damaged DNA bases by specific enzymes targeted to distinct base lesions …
SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories
Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. A detailed
computer analysis of the structural and evolutionary relationships of HJRs and related …
computer analysis of the structural and evolutionary relationships of HJRs and related …
DNA mismatch repair and mutation avoidance pathways
Unpaired and mispaired bases in DNA can arise by replication errors, spontaneous or
induced base modifications, and during recombination. The major pathway for correction of …
induced base modifications, and during recombination. The major pathway for correction of …